Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12110 and HMPREF1058_RS12105 are separated by 41 nucleotides HMPREF1058_RS12105 and HMPREF1058_RS12100 overlap by 4 nucleotides HMPREF1058_RS12100 and HMPREF1058_RS12095 are separated by 121 nucleotides
HMPREF1058_RS12110: HMPREF1058_RS12110 - biosynthetic arginine decarboxylase, at 197,858 to 199,750
_RS12110
HMPREF1058_RS12105: HMPREF1058_RS12105 - shikimate kinase, at 199,792 to 200,319
_RS12105
HMPREF1058_RS12100: HMPREF1058_RS12100 - type I DNA topoisomerase, at 200,316 to 202,754
_RS12100
HMPREF1058_RS12095: HMPREF1058_RS12095 - TonB-dependent receptor, at 202,876 to 204,573
_RS12095
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 199.487 kb on - strand, within HMPREF1058_RS12110 at 199.488 kb on + strand, within HMPREF1058_RS12110 at 199.513 kb on + strand, within HMPREF1058_RS12110 at 199.537 kb on + strand, within HMPREF1058_RS12110 at 199.573 kb on + strand at 199.574 kb on - strand at 199.574 kb on - strand at 199.659 kb on - strand at 199.713 kb on + strand at 199.713 kb on + strand at 199.775 kb on + strand at 199.776 kb on - strand at 199.785 kb on + strand at 199.785 kb on + strand at 199.786 kb on - strand at 199.787 kb on + strand at 199.789 kb on + strand at 199.790 kb on - strand at 199.793 kb on + strand at 199.797 kb on + strand at 199.846 kb on - strand, within HMPREF1058_RS12105 at 200.049 kb on + strand, within HMPREF1058_RS12105 at 200.050 kb on - strand, within HMPREF1058_RS12105 at 200.051 kb on + strand, within HMPREF1058_RS12105 at 200.051 kb on + strand, within HMPREF1058_RS12105 at 200.052 kb on - strand, within HMPREF1058_RS12105 at 200.196 kb on + strand, within HMPREF1058_RS12105 at 200.269 kb on + strand at 200.294 kb on + strand at 200.294 kb on + strand at 200.295 kb on - strand at 200.299 kb on + strand at 200.302 kb on + strand at 200.310 kb on + strand at 200.310 kb on + strand at 200.310 kb on + strand at 200.343 kb on + strand at 200.442 kb on - strand at 200.558 kb on - strand at 200.643 kb on - strand, within HMPREF1058_RS12100 at 200.735 kb on - strand, within HMPREF1058_RS12100 at 202.818 kb on - strand at 202.818 kb on - strand at 202.818 kb on - strand at 202.869 kb on + strand at 202.931 kb on + strand at 202.940 kb on + strand at 202.943 kb on + strand at 203.002 kb on - strand at 203.071 kb on + strand, within HMPREF1058_RS12095 at 203.072 kb on - strand, within HMPREF1058_RS12095 at 203.079 kb on - strand, within HMPREF1058_RS12095 at 203.096 kb on + strand, within HMPREF1058_RS12095 at 203.096 kb on + strand, within HMPREF1058_RS12095 at 203.097 kb on - strand, within HMPREF1058_RS12095 at 203.097 kb on - strand, within HMPREF1058_RS12095 at 203.103 kb on - strand, within HMPREF1058_RS12095 at 203.180 kb on - strand, within HMPREF1058_RS12095 at 203.218 kb on - strand, within HMPREF1058_RS12095 at 203.220 kb on - strand, within HMPREF1058_RS12095 at 203.368 kb on - strand, within HMPREF1058_RS12095 at 203.436 kb on + strand, within HMPREF1058_RS12095 at 203.437 kb on - strand, within HMPREF1058_RS12095 at 203.453 kb on + strand, within HMPREF1058_RS12095 at 203.457 kb on + strand, within HMPREF1058_RS12095 at 203.457 kb on + strand, within HMPREF1058_RS12095 at 203.458 kb on - strand, within HMPREF1058_RS12095 at 203.546 kb on - strand, within HMPREF1058_RS12095 at 203.546 kb on - strand, within HMPREF1058_RS12095 at 203.546 kb on - strand, within HMPREF1058_RS12095 at 203.558 kb on + strand, within HMPREF1058_RS12095 at 203.559 kb on - strand, within HMPREF1058_RS12095 at 203.559 kb on - strand, within HMPREF1058_RS12095 at 203.679 kb on + strand, within HMPREF1058_RS12095 at 203.680 kb on - strand, within HMPREF1058_RS12095 at 203.680 kb on - strand, within HMPREF1058_RS12095 at 203.682 kb on - strand, within HMPREF1058_RS12095 at 203.682 kb on - strand, within HMPREF1058_RS12095 at 203.682 kb on - strand, within HMPREF1058_RS12095 at 203.682 kb on - strand, within HMPREF1058_RS12095 at 203.706 kb on + strand, within HMPREF1058_RS12095 at 203.706 kb on + strand, within HMPREF1058_RS12095 at 203.707 kb on - strand, within HMPREF1058_RS12095
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 199,487 - HMPREF1058_RS12110 0.86 -0.9 199,488 + HMPREF1058_RS12110 0.86 -2.9 199,513 + HMPREF1058_RS12110 0.87 -4.6 199,537 + HMPREF1058_RS12110 0.89 -2.6 199,573 + -4.2 199,574 - -2.5 199,574 - -1.2 199,659 - -1.1 199,713 + -3.8 199,713 + -3.6 199,775 + -3.4 199,776 - +1.5 199,785 + -3.5 199,785 + -4.9 199,786 - -0.2 199,787 + -5.1 199,789 + -4.0 199,790 - -0.1 199,793 + -4.4 199,797 + -2.4 199,846 - HMPREF1058_RS12105 0.10 -2.6 200,049 + HMPREF1058_RS12105 0.49 -1.9 200,050 - HMPREF1058_RS12105 0.49 -4.6 200,051 + HMPREF1058_RS12105 0.49 -2.2 200,051 + HMPREF1058_RS12105 0.49 -3.3 200,052 - HMPREF1058_RS12105 0.49 -2.5 200,196 + HMPREF1058_RS12105 0.77 -2.6 200,269 + -3.9 200,294 + -4.5 200,294 + -2.6 200,295 - -4.2 200,299 + -4.7 200,302 + -0.8 200,310 + -5.7 200,310 + -3.1 200,310 + -4.7 200,343 + +0.2 200,442 - +0.1 200,558 - +2.6 200,643 - HMPREF1058_RS12100 0.13 +0.8 200,735 - HMPREF1058_RS12100 0.17 +0.8 202,818 - -0.5 202,818 - +0.2 202,818 - +0.2 202,869 + -0.7 202,931 + -0.3 202,940 + +0.3 202,943 + -0.9 203,002 - -0.4 203,071 + HMPREF1058_RS12095 0.11 +1.2 203,072 - HMPREF1058_RS12095 0.12 -0.5 203,079 - HMPREF1058_RS12095 0.12 -0.0 203,096 + HMPREF1058_RS12095 0.13 +1.5 203,096 + HMPREF1058_RS12095 0.13 +0.2 203,097 - HMPREF1058_RS12095 0.13 -0.9 203,097 - HMPREF1058_RS12095 0.13 +0.2 203,103 - HMPREF1058_RS12095 0.13 -0.3 203,180 - HMPREF1058_RS12095 0.18 -0.7 203,218 - HMPREF1058_RS12095 0.20 +0.2 203,220 - HMPREF1058_RS12095 0.20 +0.8 203,368 - HMPREF1058_RS12095 0.29 +0.1 203,436 + HMPREF1058_RS12095 0.33 -0.5 203,437 - HMPREF1058_RS12095 0.33 +1.2 203,453 + HMPREF1058_RS12095 0.34 -0.1 203,457 + HMPREF1058_RS12095 0.34 +2.6 203,457 + HMPREF1058_RS12095 0.34 -0.4 203,458 - HMPREF1058_RS12095 0.34 -0.4 203,546 - HMPREF1058_RS12095 0.39 -0.4 203,546 - HMPREF1058_RS12095 0.39 +1.6 203,546 - HMPREF1058_RS12095 0.39 -0.1 203,558 + HMPREF1058_RS12095 0.40 -0.3 203,559 - HMPREF1058_RS12095 0.40 -0.8 203,559 - HMPREF1058_RS12095 0.40 +1.8 203,679 + HMPREF1058_RS12095 0.47 -0.1 203,680 - HMPREF1058_RS12095 0.47 +0.0 203,680 - HMPREF1058_RS12095 0.47 +0.1 203,682 - HMPREF1058_RS12095 0.47 -0.1 203,682 - HMPREF1058_RS12095 0.47 +0.6 203,682 - HMPREF1058_RS12095 0.47 -1.2 203,682 - HMPREF1058_RS12095 0.47 -0.2 203,706 + HMPREF1058_RS12095 0.49 +0.1 203,706 + HMPREF1058_RS12095 0.49 +1.1 203,707 - HMPREF1058_RS12095 0.49 -0.6
Or see this region's nucleotide sequence