Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10785 and HMPREF1058_RS10780 overlap by 29 nucleotides HMPREF1058_RS10780 and HMPREF1058_RS10775 are separated by 152 nucleotides HMPREF1058_RS10775 and HMPREF1058_RS10770 are separated by 18 nucleotides
HMPREF1058_RS10785: HMPREF1058_RS10785 - RNA polymerase sigma-70 factor, at 565,781 to 566,326
_RS10785
HMPREF1058_RS10780: HMPREF1058_RS10780 - phosphoribosylglycinamide formyltransferase, at 566,298 to 566,876
_RS10780
HMPREF1058_RS10775: HMPREF1058_RS10775 - acyl carrier protein, at 567,029 to 567,265
_RS10775
HMPREF1058_RS10770: HMPREF1058_RS10770 - beta-ketoacyl-ACP synthase II, at 567,284 to 568,549
_RS10770
Position (kb) 567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 566.062 kb on - strand, within HMPREF1058_RS10785 at 566.073 kb on - strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.142 kb on - strand, within HMPREF1058_RS10785 at 566.143 kb on + strand, within HMPREF1058_RS10785 at 566.184 kb on + strand, within HMPREF1058_RS10785 at 566.184 kb on + strand, within HMPREF1058_RS10785 at 566.186 kb on + strand, within HMPREF1058_RS10785 at 566.203 kb on + strand, within HMPREF1058_RS10785 at 566.387 kb on + strand, within HMPREF1058_RS10780 at 566.450 kb on - strand, within HMPREF1058_RS10780 at 566.460 kb on + strand, within HMPREF1058_RS10780 at 566.461 kb on - strand, within HMPREF1058_RS10780 at 566.462 kb on + strand, within HMPREF1058_RS10780 at 566.462 kb on + strand, within HMPREF1058_RS10780 at 566.503 kb on - strand, within HMPREF1058_RS10780 at 566.530 kb on + strand, within HMPREF1058_RS10780 at 566.535 kb on - strand, within HMPREF1058_RS10780 at 566.574 kb on - strand, within HMPREF1058_RS10780 at 566.581 kb on - strand, within HMPREF1058_RS10780 at 566.616 kb on + strand, within HMPREF1058_RS10780 at 566.640 kb on + strand, within HMPREF1058_RS10780 at 566.641 kb on - strand, within HMPREF1058_RS10780 at 566.645 kb on + strand, within HMPREF1058_RS10780 at 566.715 kb on - strand, within HMPREF1058_RS10780
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 566,062 - HMPREF1058_RS10785 0.51 -2.8 566,073 - HMPREF1058_RS10785 0.53 -0.8 566,137 + HMPREF1058_RS10785 0.65 -0.2 566,137 + HMPREF1058_RS10785 0.65 -0.4 566,137 + HMPREF1058_RS10785 0.65 -0.7 566,138 - HMPREF1058_RS10785 0.65 -0.4 566,138 - HMPREF1058_RS10785 0.65 -0.7 566,138 - HMPREF1058_RS10785 0.65 -0.5 566,141 + HMPREF1058_RS10785 0.66 -0.0 566,141 + HMPREF1058_RS10785 0.66 +0.2 566,141 + HMPREF1058_RS10785 0.66 +0.5 566,141 + HMPREF1058_RS10785 0.66 +0.7 566,141 + HMPREF1058_RS10785 0.66 +0.1 566,142 - HMPREF1058_RS10785 0.66 +0.3 566,143 + HMPREF1058_RS10785 0.66 -1.0 566,184 + HMPREF1058_RS10785 0.74 -0.5 566,184 + HMPREF1058_RS10785 0.74 -1.2 566,186 + HMPREF1058_RS10785 0.74 -0.6 566,203 + HMPREF1058_RS10785 0.77 -0.1 566,387 + HMPREF1058_RS10780 0.15 -0.4 566,450 - HMPREF1058_RS10780 0.26 -0.2 566,460 + HMPREF1058_RS10780 0.28 -0.5 566,461 - HMPREF1058_RS10780 0.28 -0.1 566,462 + HMPREF1058_RS10780 0.28 -1.7 566,462 + HMPREF1058_RS10780 0.28 +1.8 566,503 - HMPREF1058_RS10780 0.35 -0.0 566,530 + HMPREF1058_RS10780 0.40 +0.1 566,535 - HMPREF1058_RS10780 0.41 -0.9 566,574 - HMPREF1058_RS10780 0.48 -2.0 566,581 - HMPREF1058_RS10780 0.49 -0.8 566,616 + HMPREF1058_RS10780 0.55 -0.0 566,640 + HMPREF1058_RS10780 0.59 -0.4 566,641 - HMPREF1058_RS10780 0.59 +2.6 566,645 + HMPREF1058_RS10780 0.60 -0.5 566,715 - HMPREF1058_RS10780 0.72 -0.1
Or see this region's nucleotide sequence