Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10215 and HMPREF1058_RS10210 are separated by 1 nucleotides HMPREF1058_RS10210 and HMPREF1058_RS10205 are separated by 26 nucleotides HMPREF1058_RS10205 and HMPREF1058_RS10200 overlap by 4 nucleotides HMPREF1058_RS10200 and HMPREF1058_RS10195 are separated by 4 nucleotides HMPREF1058_RS10195 and HMPREF1058_RS10190 overlap by 4 nucleotides
HMPREF1058_RS10215: HMPREF1058_RS10215 - DUF4417 domain-containing protein, at 706,861 to 707,979
_RS10215
HMPREF1058_RS10210: HMPREF1058_RS10210 - hypothetical protein, at 707,981 to 708,391
_RS10210
HMPREF1058_RS10205: HMPREF1058_RS10205 - hypothetical protein, at 708,418 to 708,858
_RS10205
HMPREF1058_RS10200: HMPREF1058_RS10200 - hypothetical protein, at 708,855 to 709,247
_RS10200
HMPREF1058_RS10195: HMPREF1058_RS10195 - 3'-5' exonuclease, at 709,252 to 709,824
_RS10195
HMPREF1058_RS10190: HMPREF1058_RS10190 - ParB/RepB/Spo0J family partition protein, at 709,821 to 710,633
_RS10190
Position (kb) 708
709 Strain fitness (log2 ratio) -2
-1
0
1
2 at 707.459 kb on + strand, within HMPREF1058_RS10215 at 707.459 kb on + strand, within HMPREF1058_RS10215 at 707.604 kb on + strand, within HMPREF1058_RS10215 at 707.704 kb on + strand, within HMPREF1058_RS10215 at 707.705 kb on - strand, within HMPREF1058_RS10215 at 707.705 kb on - strand, within HMPREF1058_RS10215 at 707.807 kb on - strand, within HMPREF1058_RS10215 at 707.811 kb on - strand, within HMPREF1058_RS10215 at 707.811 kb on - strand, within HMPREF1058_RS10215 at 707.894 kb on - strand at 708.124 kb on + strand, within HMPREF1058_RS10210 at 708.125 kb on - strand, within HMPREF1058_RS10210 at 708.126 kb on + strand, within HMPREF1058_RS10210 at 708.149 kb on - strand, within HMPREF1058_RS10210 at 708.153 kb on + strand, within HMPREF1058_RS10210 at 708.154 kb on - strand, within HMPREF1058_RS10210 at 708.159 kb on + strand, within HMPREF1058_RS10210 at 708.159 kb on + strand, within HMPREF1058_RS10210 at 708.160 kb on - strand, within HMPREF1058_RS10210 at 708.163 kb on + strand, within HMPREF1058_RS10210 at 708.177 kb on - strand, within HMPREF1058_RS10210 at 708.177 kb on - strand, within HMPREF1058_RS10210 at 708.219 kb on + strand, within HMPREF1058_RS10210 at 708.222 kb on - strand at 708.255 kb on + strand, within HMPREF1058_RS10210 at 708.314 kb on + strand, within HMPREF1058_RS10210 at 708.314 kb on + strand, within HMPREF1058_RS10210 at 708.314 kb on + strand, within HMPREF1058_RS10210 at 708.319 kb on + strand, within HMPREF1058_RS10210 at 708.319 kb on + strand, within HMPREF1058_RS10210 at 708.325 kb on + strand, within HMPREF1058_RS10210 at 708.326 kb on - strand, within HMPREF1058_RS10210 at 708.373 kb on + strand at 708.434 kb on - strand at 708.434 kb on - strand at 708.450 kb on + strand at 708.585 kb on + strand, within HMPREF1058_RS10205 at 708.586 kb on - strand, within HMPREF1058_RS10205 at 708.608 kb on - strand, within HMPREF1058_RS10205 at 708.766 kb on - strand, within HMPREF1058_RS10205 at 708.826 kb on - strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.847 kb on + strand at 708.851 kb on + strand at 708.851 kb on + strand at 708.851 kb on + strand at 708.852 kb on - strand at 708.925 kb on - strand, within HMPREF1058_RS10200 at 708.994 kb on + strand, within HMPREF1058_RS10200 at 708.999 kb on - strand, within HMPREF1058_RS10200 at 709.032 kb on - strand, within HMPREF1058_RS10200 at 709.112 kb on + strand, within HMPREF1058_RS10200 at 709.113 kb on - strand, within HMPREF1058_RS10200 at 709.196 kb on + strand, within HMPREF1058_RS10200 at 709.254 kb on - strand at 709.276 kb on - strand at 709.284 kb on + strand at 709.307 kb on + strand at 709.409 kb on + strand, within HMPREF1058_RS10195 at 709.435 kb on + strand, within HMPREF1058_RS10195 at 709.483 kb on + strand, within HMPREF1058_RS10195 at 709.524 kb on + strand, within HMPREF1058_RS10195 at 709.528 kb on - strand, within HMPREF1058_RS10195 at 709.562 kb on + strand, within HMPREF1058_RS10195 at 709.611 kb on - strand, within HMPREF1058_RS10195 at 709.631 kb on - strand, within HMPREF1058_RS10195 at 709.631 kb on - strand, within HMPREF1058_RS10195 at 709.663 kb on + strand, within HMPREF1058_RS10195 at 709.695 kb on + strand, within HMPREF1058_RS10195 at 709.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 707,459 + HMPREF1058_RS10215 0.53 -0.9 707,459 + HMPREF1058_RS10215 0.53 +0.5 707,604 + HMPREF1058_RS10215 0.66 +0.7 707,704 + HMPREF1058_RS10215 0.75 -0.4 707,705 - HMPREF1058_RS10215 0.75 -0.5 707,705 - HMPREF1058_RS10215 0.75 +0.2 707,807 - HMPREF1058_RS10215 0.85 -2.3 707,811 - HMPREF1058_RS10215 0.85 +1.2 707,811 - HMPREF1058_RS10215 0.85 +0.7 707,894 - -1.2 708,124 + HMPREF1058_RS10210 0.35 +0.7 708,125 - HMPREF1058_RS10210 0.35 +0.0 708,126 + HMPREF1058_RS10210 0.35 +0.1 708,149 - HMPREF1058_RS10210 0.41 +0.6 708,153 + HMPREF1058_RS10210 0.42 -0.2 708,154 - HMPREF1058_RS10210 0.42 +0.2 708,159 + HMPREF1058_RS10210 0.43 -0.6 708,159 + HMPREF1058_RS10210 0.43 +0.9 708,160 - HMPREF1058_RS10210 0.44 +1.3 708,163 + HMPREF1058_RS10210 0.44 -0.2 708,177 - HMPREF1058_RS10210 0.48 +1.3 708,177 - HMPREF1058_RS10210 0.48 +0.9 708,219 + HMPREF1058_RS10210 0.58 +0.4 708,222 - +0.6 708,255 + HMPREF1058_RS10210 0.67 -0.0 708,314 + HMPREF1058_RS10210 0.81 +0.1 708,314 + HMPREF1058_RS10210 0.81 -1.2 708,314 + HMPREF1058_RS10210 0.81 +0.1 708,319 + HMPREF1058_RS10210 0.82 +0.8 708,319 + HMPREF1058_RS10210 0.82 -0.1 708,325 + HMPREF1058_RS10210 0.84 +0.0 708,326 - HMPREF1058_RS10210 0.84 +0.6 708,373 + -0.5 708,434 - +1.9 708,434 - +0.3 708,450 + +0.1 708,585 + HMPREF1058_RS10205 0.38 +0.5 708,586 - HMPREF1058_RS10205 0.38 +0.8 708,608 - HMPREF1058_RS10205 0.43 +0.6 708,766 - HMPREF1058_RS10205 0.79 +0.8 708,826 - +0.4 708,829 + +0.2 708,829 + -0.1 708,829 + +0.9 708,829 + -0.2 708,829 + -0.4 708,829 + -0.3 708,830 - +0.8 708,830 - +1.2 708,830 - +1.2 708,830 - +0.9 708,847 + -1.5 708,851 + -0.3 708,851 + -0.3 708,851 + +0.2 708,852 - +0.8 708,925 - HMPREF1058_RS10200 0.18 +0.9 708,994 + HMPREF1058_RS10200 0.35 -1.1 708,999 - HMPREF1058_RS10200 0.37 +0.1 709,032 - HMPREF1058_RS10200 0.45 +0.2 709,112 + HMPREF1058_RS10200 0.65 -0.5 709,113 - HMPREF1058_RS10200 0.66 +1.0 709,196 + HMPREF1058_RS10200 0.87 +0.8 709,254 - +2.1 709,276 - +2.0 709,284 + -0.4 709,307 + +1.1 709,409 + HMPREF1058_RS10195 0.27 +0.1 709,435 + HMPREF1058_RS10195 0.32 +0.1 709,483 + HMPREF1058_RS10195 0.40 -0.1 709,524 + HMPREF1058_RS10195 0.47 -0.0 709,528 - HMPREF1058_RS10195 0.48 +1.0 709,562 + HMPREF1058_RS10195 0.54 +0.1 709,611 - HMPREF1058_RS10195 0.63 -0.1 709,631 - HMPREF1058_RS10195 0.66 +0.8 709,631 - HMPREF1058_RS10195 0.66 +0.2 709,663 + HMPREF1058_RS10195 0.72 +0.1 709,695 + HMPREF1058_RS10195 0.77 +0.5 709,783 + +0.0
Or see this region's nucleotide sequence