Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06075

Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; autoclaved 2.5 mg/ml (C)
10,299	+		HMPREF1058_RS06080	0.63	+0.2
10,300	-		HMPREF1058_RS06080	0.63	-1.9
10,431	-		HMPREF1058_RS06080	0.69	-1.1
10,475	-		HMPREF1058_RS06080	0.71	-0.9
10,476	+		HMPREF1058_RS06080	0.71	+1.4
10,686	-		HMPREF1058_RS06080	0.81	+0.2
10,686	-		HMPREF1058_RS06080	0.81	-0.4
10,826	+		HMPREF1058_RS06080	0.87	+0.1
10,899	-				+0.9
10,946	+				+0.1
10,988	-				-0.2
11,140	+				-0.2
11,183	+				-1.2
11,184	-				-0.3
11,235	+				-0.7
11,259	+				-2.8
11,839	+				-0.5
11,852	+				-1.1
11,981	-				+0.9
11,990	+				-0.9
11,991	-				+0.5
12,049	-				-1.1
12,049	-				+0.4
12,114	+				-0.1
12,139	-		HMPREF1058_RS21345	0.24	+0.5
12,139	-		HMPREF1058_RS21345	0.24	-0.7
12,143	+		HMPREF1058_RS21345	0.26	+0.0
12,172	+		HMPREF1058_RS21345	0.45	+0.1
12,173	-		HMPREF1058_RS21345	0.46	+0.8
12,216	-		HMPREF1058_RS21345	0.74	-0.5
12,216	-		HMPREF1058_RS21345	0.74	+1.1
12,216	-		HMPREF1058_RS21345	0.74	+0.8
12,253	+				-0.7
12,254	-				-0.3
12,254	-				+0.8
12,258	-				-0.4
12,258	-				+2.3
12,258	-				+1.0
12,282	+				-0.1
12,320	+				+1.1
12,439	+		HMPREF1058_RS06070	0.29	-0.6
12,476	+		HMPREF1058_RS06070	0.37	-0.4
12,477	-		HMPREF1058_RS06070	0.37	+0.0
12,710	+		HMPREF1058_RS06070	0.82	-1.2
12,757	+				-0.8
12,765	-				-0.1
12,765	-				+0.4
12,765	-				+0.0
12,766	+				-0.5
12,783	+				+0.4
12,783	+				+3.1
12,784	-				+2.0
12,784	-				-0.6
12,785	+				-1.5
12,786	-				-1.5
12,849	+				+2.9
12,880	+				-0.2
12,881	-				+0.8
12,890	+				-0.0
12,890	+				-0.8
12,890	+				-0.4
12,890	+				-0.1
12,919	+				+0.9
12,935	-				+0.0
12,962	+				-0.1
12,962	+				+2.1
12,962	+				-0.1
12,963	-				+2.5
12,963	-				+1.1