Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04065 and HMPREF1058_RS04060 are separated by 12 nucleotides HMPREF1058_RS04060 and HMPREF1058_RS04055 are separated by 9 nucleotides HMPREF1058_RS04055 and HMPREF1058_RS04050 are separated by 39 nucleotides
HMPREF1058_RS04065: HMPREF1058_RS04065 - VWA domain-containing protein, at 123,233 to 124,231
_RS04065
HMPREF1058_RS04060: HMPREF1058_RS04060 - VWA domain-containing protein, at 124,244 to 125,266
_RS04060
HMPREF1058_RS04055: HMPREF1058_RS04055 - tetratricopeptide repeat protein, at 125,276 to 125,983
_RS04055
HMPREF1058_RS04050: HMPREF1058_RS04050 - protein BatD, at 126,023 to 127,858
_RS04050
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 123.284 kb on + strand at 123.284 kb on + strand at 123.285 kb on - strand at 123.285 kb on - strand at 123.289 kb on - strand at 123.292 kb on - strand at 123.486 kb on + strand, within HMPREF1058_RS04065 at 123.529 kb on + strand, within HMPREF1058_RS04065 at 124.089 kb on + strand, within HMPREF1058_RS04065 at 124.274 kb on + strand at 124.288 kb on - strand at 124.909 kb on - strand, within HMPREF1058_RS04060 at 125.256 kb on + strand at 125.264 kb on + strand at 125.275 kb on + strand at 125.292 kb on - strand at 125.292 kb on - strand at 125.310 kb on + strand at 125.378 kb on + strand, within HMPREF1058_RS04055 at 126.002 kb on + strand at 126.049 kb on - strand at 126.118 kb on - strand at 126.151 kb on + strand at 126.244 kb on + strand, within HMPREF1058_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 123,284 + -1.5 123,284 + +2.2 123,285 - +0.6 123,285 - +0.6 123,289 - +0.2 123,292 - +2.2 123,486 + HMPREF1058_RS04065 0.25 -1.2 123,529 + HMPREF1058_RS04065 0.30 -0.6 124,089 + HMPREF1058_RS04065 0.86 +1.2 124,274 + -1.3 124,288 - +0.6 124,909 - HMPREF1058_RS04060 0.65 +1.2 125,256 + +0.6 125,264 + +0.7 125,275 + -2.2 125,292 - +0.6 125,292 - +0.6 125,310 + -0.2 125,378 + HMPREF1058_RS04055 0.14 +0.2 126,002 + +2.2 126,049 - -1.2 126,118 - +0.6 126,151 + +0.2 126,244 + HMPREF1058_RS04050 0.12 +0.6
Or see this region's nucleotide sequence