Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05710 and HMPREF1058_RS0119825 are separated by 51 nucleotides HMPREF1058_RS0119825 and HMPREF1058_RS05705 overlap by 4 nucleotides
HMPREF1058_RS05710: HMPREF1058_RS05710 - virulence RhuM family protein, at 95,094 to 96,089
_RS05710
HMPREF1058_RS0119825: HMPREF1058_RS0119825 - DEAD/DEAH box helicase, at 96,141 to 97,817
_RS0119825
HMPREF1058_RS05705: HMPREF1058_RS05705 - DGQHR domain-containing protein, at 97,814 to 100,150
_RS05705
Position (kb) 96
97
98 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 95.168 kb on + strand at 95.173 kb on + strand at 95.173 kb on + strand at 95.291 kb on + strand, within HMPREF1058_RS05710 at 95.310 kb on - strand, within HMPREF1058_RS05710 at 95.312 kb on + strand, within HMPREF1058_RS05710 at 95.324 kb on + strand, within HMPREF1058_RS05710 at 95.324 kb on + strand, within HMPREF1058_RS05710 at 95.325 kb on - strand, within HMPREF1058_RS05710 at 95.417 kb on + strand, within HMPREF1058_RS05710 at 95.468 kb on + strand, within HMPREF1058_RS05710 at 95.486 kb on - strand, within HMPREF1058_RS05710 at 95.581 kb on + strand, within HMPREF1058_RS05710 at 95.603 kb on - strand, within HMPREF1058_RS05710 at 95.603 kb on - strand, within HMPREF1058_RS05710 at 95.604 kb on + strand, within HMPREF1058_RS05710 at 95.605 kb on - strand, within HMPREF1058_RS05710 at 95.605 kb on - strand, within HMPREF1058_RS05710 at 95.605 kb on - strand, within HMPREF1058_RS05710 at 95.631 kb on - strand, within HMPREF1058_RS05710 at 95.855 kb on + strand, within HMPREF1058_RS05710 at 95.856 kb on - strand, within HMPREF1058_RS05710 at 95.856 kb on - strand, within HMPREF1058_RS05710 at 95.857 kb on + strand, within HMPREF1058_RS05710 at 95.857 kb on + strand, within HMPREF1058_RS05710 at 95.857 kb on + strand, within HMPREF1058_RS05710 at 95.857 kb on + strand, within HMPREF1058_RS05710 at 95.859 kb on + strand, within HMPREF1058_RS05710 at 95.898 kb on + strand, within HMPREF1058_RS05710 at 95.913 kb on + strand, within HMPREF1058_RS05710 at 95.934 kb on - strand, within HMPREF1058_RS05710 at 96.027 kb on + strand at 96.028 kb on - strand at 96.031 kb on + strand at 96.032 kb on - strand at 96.033 kb on + strand at 96.061 kb on + strand at 96.061 kb on + strand at 96.061 kb on + strand at 96.104 kb on - strand at 96.105 kb on + strand at 96.106 kb on - strand at 96.112 kb on - strand at 96.150 kb on + strand at 96.151 kb on - strand at 96.151 kb on - strand at 96.226 kb on - strand at 96.226 kb on - strand at 96.228 kb on - strand at 96.311 kb on + strand, within HMPREF1058_RS0119825 at 96.312 kb on - strand, within HMPREF1058_RS0119825 at 96.345 kb on - strand, within HMPREF1058_RS0119825 at 96.345 kb on - strand, within HMPREF1058_RS0119825 at 96.348 kb on + strand, within HMPREF1058_RS0119825 at 96.380 kb on + strand, within HMPREF1058_RS0119825 at 96.440 kb on + strand, within HMPREF1058_RS0119825 at 96.565 kb on - strand, within HMPREF1058_RS0119825 at 96.566 kb on + strand, within HMPREF1058_RS0119825 at 96.611 kb on - strand, within HMPREF1058_RS0119825 at 96.611 kb on - strand, within HMPREF1058_RS0119825 at 96.611 kb on - strand, within HMPREF1058_RS0119825 at 96.621 kb on - strand, within HMPREF1058_RS0119825 at 96.621 kb on - strand, within HMPREF1058_RS0119825 at 96.630 kb on - strand, within HMPREF1058_RS0119825 at 96.659 kb on - strand, within HMPREF1058_RS0119825 at 96.727 kb on + strand, within HMPREF1058_RS0119825 at 96.727 kb on + strand, within HMPREF1058_RS0119825 at 96.728 kb on - strand, within HMPREF1058_RS0119825 at 96.751 kb on - strand, within HMPREF1058_RS0119825 at 96.924 kb on + strand, within HMPREF1058_RS0119825 at 96.925 kb on - strand, within HMPREF1058_RS0119825 at 96.925 kb on - strand, within HMPREF1058_RS0119825 at 96.978 kb on + strand, within HMPREF1058_RS0119825 at 96.978 kb on + strand, within HMPREF1058_RS0119825 at 97.006 kb on - strand, within HMPREF1058_RS0119825 at 97.016 kb on + strand, within HMPREF1058_RS0119825 at 97.017 kb on - strand, within HMPREF1058_RS0119825 at 97.017 kb on - strand, within HMPREF1058_RS0119825 at 97.035 kb on - strand, within HMPREF1058_RS0119825 at 97.036 kb on + strand, within HMPREF1058_RS0119825 at 97.036 kb on + strand, within HMPREF1058_RS0119825 at 97.040 kb on + strand, within HMPREF1058_RS0119825 at 97.073 kb on - strand, within HMPREF1058_RS0119825 at 97.073 kb on - strand, within HMPREF1058_RS0119825 at 97.131 kb on - strand, within HMPREF1058_RS0119825 at 97.149 kb on + strand, within HMPREF1058_RS0119825 at 97.149 kb on + strand, within HMPREF1058_RS0119825 at 97.164 kb on - strand, within HMPREF1058_RS0119825 at 97.200 kb on - strand, within HMPREF1058_RS0119825 at 97.213 kb on + strand, within HMPREF1058_RS0119825 at 97.214 kb on - strand, within HMPREF1058_RS0119825 at 97.219 kb on + strand, within HMPREF1058_RS0119825 at 97.245 kb on - strand, within HMPREF1058_RS0119825 at 97.254 kb on - strand, within HMPREF1058_RS0119825 at 97.272 kb on - strand, within HMPREF1058_RS0119825 at 97.273 kb on + strand at 97.273 kb on + strand, within HMPREF1058_RS0119825 at 97.304 kb on + strand, within HMPREF1058_RS0119825 at 97.305 kb on - strand, within HMPREF1058_RS0119825 at 97.414 kb on - strand, within HMPREF1058_RS0119825 at 97.428 kb on - strand, within HMPREF1058_RS0119825 at 97.530 kb on + strand, within HMPREF1058_RS0119825 at 97.566 kb on - strand, within HMPREF1058_RS0119825 at 97.592 kb on + strand, within HMPREF1058_RS0119825 at 97.629 kb on - strand, within HMPREF1058_RS0119825 at 97.646 kb on + strand, within HMPREF1058_RS0119825 at 97.711 kb on - strand at 97.805 kb on + strand at 97.805 kb on + strand at 97.916 kb on - strand at 97.916 kb on - strand at 97.919 kb on - strand at 97.921 kb on - strand at 97.927 kb on + strand at 97.946 kb on - strand at 97.980 kb on - strand at 98.034 kb on - strand at 98.044 kb on + strand at 98.140 kb on + strand, within HMPREF1058_RS05705 at 98.141 kb on - strand, within HMPREF1058_RS05705 at 98.141 kb on - strand, within HMPREF1058_RS05705 at 98.162 kb on - strand, within HMPREF1058_RS05705 at 98.181 kb on + strand, within HMPREF1058_RS05705 at 98.181 kb on + strand, within HMPREF1058_RS05705 at 98.198 kb on - strand, within HMPREF1058_RS05705 at 98.217 kb on - strand, within HMPREF1058_RS05705 at 98.218 kb on + strand, within HMPREF1058_RS05705 at 98.344 kb on - strand, within HMPREF1058_RS05705 at 98.380 kb on + strand, within HMPREF1058_RS05705 at 98.408 kb on + strand, within HMPREF1058_RS05705 at 98.409 kb on - strand, within HMPREF1058_RS05705 at 98.409 kb on - strand, within HMPREF1058_RS05705 at 98.410 kb on + strand, within HMPREF1058_RS05705 at 98.416 kb on + strand, within HMPREF1058_RS05705 at 98.427 kb on + strand, within HMPREF1058_RS05705 at 98.427 kb on + strand, within HMPREF1058_RS05705 at 98.544 kb on - strand, within HMPREF1058_RS05705 at 98.554 kb on - strand, within HMPREF1058_RS05705 at 98.557 kb on + strand, within HMPREF1058_RS05705 at 98.683 kb on + strand, within HMPREF1058_RS05705 at 98.709 kb on + strand, within HMPREF1058_RS05705 at 98.711 kb on + strand, within HMPREF1058_RS05705 at 98.718 kb on - strand, within HMPREF1058_RS05705 at 98.756 kb on - strand, within HMPREF1058_RS05705
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 95,168 + +0.1 95,173 + -0.1 95,173 + +1.2 95,291 + HMPREF1058_RS05710 0.20 +0.5 95,310 - HMPREF1058_RS05710 0.22 -0.0 95,312 + HMPREF1058_RS05710 0.22 -0.1 95,324 + HMPREF1058_RS05710 0.23 -0.4 95,324 + HMPREF1058_RS05710 0.23 -0.7 95,325 - HMPREF1058_RS05710 0.23 -0.2 95,417 + HMPREF1058_RS05710 0.32 +0.3 95,468 + HMPREF1058_RS05710 0.38 -0.6 95,486 - HMPREF1058_RS05710 0.39 +0.1 95,581 + HMPREF1058_RS05710 0.49 +0.1 95,603 - HMPREF1058_RS05710 0.51 +0.7 95,603 - HMPREF1058_RS05710 0.51 -0.6 95,604 + HMPREF1058_RS05710 0.51 -1.4 95,605 - HMPREF1058_RS05710 0.51 -1.2 95,605 - HMPREF1058_RS05710 0.51 -0.1 95,605 - HMPREF1058_RS05710 0.51 -1.1 95,631 - HMPREF1058_RS05710 0.54 -1.0 95,855 + HMPREF1058_RS05710 0.76 +0.2 95,856 - HMPREF1058_RS05710 0.77 +0.1 95,856 - HMPREF1058_RS05710 0.77 +0.4 95,857 + HMPREF1058_RS05710 0.77 +0.1 95,857 + HMPREF1058_RS05710 0.77 +0.3 95,857 + HMPREF1058_RS05710 0.77 +1.4 95,857 + HMPREF1058_RS05710 0.77 +0.3 95,859 + HMPREF1058_RS05710 0.77 -0.1 95,898 + HMPREF1058_RS05710 0.81 -0.3 95,913 + HMPREF1058_RS05710 0.82 +0.0 95,934 - HMPREF1058_RS05710 0.84 +0.4 96,027 + +1.5 96,028 - +2.8 96,031 + -0.1 96,032 - +0.1 96,033 + -0.3 96,061 + +0.3 96,061 + -0.7 96,061 + -0.8 96,104 - +0.7 96,105 + -0.6 96,106 - -0.4 96,112 - -1.1 96,150 + -1.2 96,151 - -1.2 96,151 - -0.6 96,226 - -1.7 96,226 - -1.7 96,228 - +0.1 96,311 + HMPREF1058_RS0119825 0.10 -1.4 96,312 - HMPREF1058_RS0119825 0.10 -2.0 96,345 - HMPREF1058_RS0119825 0.12 -1.5 96,345 - HMPREF1058_RS0119825 0.12 +0.1 96,348 + HMPREF1058_RS0119825 0.12 +0.8 96,380 + HMPREF1058_RS0119825 0.14 -1.2 96,440 + HMPREF1058_RS0119825 0.18 -1.2 96,565 - HMPREF1058_RS0119825 0.25 -0.7 96,566 + HMPREF1058_RS0119825 0.25 -3.0 96,611 - HMPREF1058_RS0119825 0.28 -0.3 96,611 - HMPREF1058_RS0119825 0.28 -1.6 96,611 - HMPREF1058_RS0119825 0.28 -0.8 96,621 - HMPREF1058_RS0119825 0.29 -1.7 96,621 - HMPREF1058_RS0119825 0.29 +0.1 96,630 - HMPREF1058_RS0119825 0.29 -0.9 96,659 - HMPREF1058_RS0119825 0.31 -0.1 96,727 + HMPREF1058_RS0119825 0.35 +1.1 96,727 + HMPREF1058_RS0119825 0.35 -1.6 96,728 - HMPREF1058_RS0119825 0.35 -1.9 96,751 - HMPREF1058_RS0119825 0.36 -3.3 96,924 + HMPREF1058_RS0119825 0.47 -2.1 96,925 - HMPREF1058_RS0119825 0.47 -1.2 96,925 - HMPREF1058_RS0119825 0.47 -1.2 96,978 + HMPREF1058_RS0119825 0.50 -1.5 96,978 + HMPREF1058_RS0119825 0.50 +0.5 97,006 - HMPREF1058_RS0119825 0.52 -2.7 97,016 + HMPREF1058_RS0119825 0.52 -0.9 97,017 - HMPREF1058_RS0119825 0.52 -3.2 97,017 - HMPREF1058_RS0119825 0.52 +1.1 97,035 - HMPREF1058_RS0119825 0.53 -0.3 97,036 + HMPREF1058_RS0119825 0.53 -1.9 97,036 + HMPREF1058_RS0119825 0.53 -2.6 97,040 + HMPREF1058_RS0119825 0.54 -0.6 97,073 - HMPREF1058_RS0119825 0.56 -0.9 97,073 - HMPREF1058_RS0119825 0.56 -1.2 97,131 - HMPREF1058_RS0119825 0.59 -0.8 97,149 + HMPREF1058_RS0119825 0.60 -2.3 97,149 + HMPREF1058_RS0119825 0.60 -2.5 97,164 - HMPREF1058_RS0119825 0.61 -2.1 97,200 - HMPREF1058_RS0119825 0.63 -1.5 97,213 + HMPREF1058_RS0119825 0.64 -4.0 97,214 - HMPREF1058_RS0119825 0.64 -0.5 97,219 + HMPREF1058_RS0119825 0.64 -3.1 97,245 - HMPREF1058_RS0119825 0.66 +0.8 97,254 - HMPREF1058_RS0119825 0.66 -0.1 97,272 - HMPREF1058_RS0119825 0.67 +1.1 97,273 + -0.5 97,273 + HMPREF1058_RS0119825 0.68 -1.9 97,304 + HMPREF1058_RS0119825 0.69 -0.9 97,305 - HMPREF1058_RS0119825 0.69 -2.1 97,414 - HMPREF1058_RS0119825 0.76 -1.2 97,428 - HMPREF1058_RS0119825 0.77 -0.6 97,530 + HMPREF1058_RS0119825 0.83 -0.9 97,566 - HMPREF1058_RS0119825 0.85 -1.5 97,592 + HMPREF1058_RS0119825 0.87 -0.9 97,629 - HMPREF1058_RS0119825 0.89 -0.8 97,646 + HMPREF1058_RS0119825 0.90 +2.2 97,711 - -0.1 97,805 + -0.4 97,805 + -0.7 97,916 - +0.4 97,916 - +0.5 97,919 - +0.4 97,921 - -1.0 97,927 + +1.3 97,946 - +1.1 97,980 - +0.3 98,034 - +0.1 98,044 + -0.6 98,140 + HMPREF1058_RS05705 0.14 +0.1 98,141 - HMPREF1058_RS05705 0.14 -0.4 98,141 - HMPREF1058_RS05705 0.14 -0.2 98,162 - HMPREF1058_RS05705 0.15 +1.3 98,181 + HMPREF1058_RS05705 0.16 -1.1 98,181 + HMPREF1058_RS05705 0.16 -1.2 98,198 - HMPREF1058_RS05705 0.16 +0.2 98,217 - HMPREF1058_RS05705 0.17 +0.1 98,218 + HMPREF1058_RS05705 0.17 +0.5 98,344 - HMPREF1058_RS05705 0.23 -0.7 98,380 + HMPREF1058_RS05705 0.24 +0.1 98,408 + HMPREF1058_RS05705 0.25 -0.4 98,409 - HMPREF1058_RS05705 0.25 -0.2 98,409 - HMPREF1058_RS05705 0.25 +2.1 98,410 + HMPREF1058_RS05705 0.26 +0.9 98,416 + HMPREF1058_RS05705 0.26 +0.5 98,427 + HMPREF1058_RS05705 0.26 -0.5 98,427 + HMPREF1058_RS05705 0.26 +1.1 98,544 - HMPREF1058_RS05705 0.31 -0.9 98,554 - HMPREF1058_RS05705 0.32 -0.2 98,557 + HMPREF1058_RS05705 0.32 -0.3 98,683 + HMPREF1058_RS05705 0.37 +0.2 98,709 + HMPREF1058_RS05705 0.38 -1.2 98,711 + HMPREF1058_RS05705 0.38 +0.5 98,718 - HMPREF1058_RS05705 0.39 -0.4 98,756 - HMPREF1058_RS05705 0.40 +0.6
Or see this region's nucleotide sequence