Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01200 and HMPREF1058_RS01195 are separated by 244 nucleotides HMPREF1058_RS01195 and HMPREF1058_RS01190 are separated by 87 nucleotides HMPREF1058_RS01190 and HMPREF1058_RS01185 are separated by 7 nucleotides
HMPREF1058_RS01200: HMPREF1058_RS01200 - diacylglycerol kinase family lipid kinase, at 182,113 to 183,147
_RS01200
HMPREF1058_RS01195: HMPREF1058_RS01195 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 183,392 to 184,579
_RS01195
HMPREF1058_RS01190: HMPREF1058_RS01190 - DMT family transporter, at 184,667 to 185,554
_RS01190
HMPREF1058_RS01185: HMPREF1058_RS01185 - ABC transporter permease, at 185,562 to 187,913
_RS01185
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 183.206 kb on - strand at 183.239 kb on + strand at 183.284 kb on + strand at 183.329 kb on + strand at 183.343 kb on + strand at 183.345 kb on + strand at 183.345 kb on + strand at 183.375 kb on + strand at 183.379 kb on + strand at 184.572 kb on + strand at 184.626 kb on + strand at 184.626 kb on + strand at 184.626 kb on + strand at 184.626 kb on + strand at 184.626 kb on + strand at 184.627 kb on - strand at 184.627 kb on - strand at 184.629 kb on + strand at 184.630 kb on - strand at 184.653 kb on + strand at 184.690 kb on - strand at 184.851 kb on + strand, within HMPREF1058_RS01190 at 184.852 kb on - strand, within HMPREF1058_RS01190 at 184.852 kb on - strand, within HMPREF1058_RS01190 at 184.857 kb on - strand, within HMPREF1058_RS01190 at 184.923 kb on + strand, within HMPREF1058_RS01190 at 184.924 kb on - strand, within HMPREF1058_RS01190 at 184.958 kb on - strand, within HMPREF1058_RS01190 at 184.970 kb on - strand, within HMPREF1058_RS01190 at 184.970 kb on - strand, within HMPREF1058_RS01190 at 184.974 kb on - strand, within HMPREF1058_RS01190 at 185.062 kb on - strand, within HMPREF1058_RS01190 at 185.073 kb on + strand, within HMPREF1058_RS01190 at 185.077 kb on - strand, within HMPREF1058_RS01190 at 185.092 kb on - strand, within HMPREF1058_RS01190 at 185.096 kb on + strand, within HMPREF1058_RS01190 at 185.099 kb on - strand, within HMPREF1058_RS01190 at 185.163 kb on - strand, within HMPREF1058_RS01190 at 185.164 kb on + strand, within HMPREF1058_RS01190 at 185.166 kb on + strand, within HMPREF1058_RS01190 at 185.167 kb on - strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.169 kb on + strand, within HMPREF1058_RS01190 at 185.170 kb on - strand, within HMPREF1058_RS01190 at 185.173 kb on + strand, within HMPREF1058_RS01190 at 185.174 kb on - strand, within HMPREF1058_RS01190 at 185.176 kb on - strand, within HMPREF1058_RS01190 at 185.206 kb on + strand, within HMPREF1058_RS01190 at 185.206 kb on + strand, within HMPREF1058_RS01190 at 185.212 kb on - strand, within HMPREF1058_RS01190 at 185.270 kb on + strand, within HMPREF1058_RS01190 at 185.270 kb on + strand, within HMPREF1058_RS01190 at 185.316 kb on - strand, within HMPREF1058_RS01190 at 185.449 kb on - strand, within HMPREF1058_RS01190 at 185.449 kb on - strand, within HMPREF1058_RS01190 at 185.449 kb on - strand, within HMPREF1058_RS01190 at 185.473 kb on + strand at 185.473 kb on + strand at 185.474 kb on - strand at 185.478 kb on - strand at 185.478 kb on - strand at 185.547 kb on - strand at 185.548 kb on + strand at 185.549 kb on - strand at 185.549 kb on - strand at 185.552 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 183,206 - +0.7 183,239 + +0.6 183,284 + +0.2 183,329 + +0.7 183,343 + -0.1 183,345 + +2.2 183,345 + +0.6 183,375 + -2.2 183,379 + -0.2 184,572 + +1.6 184,626 + +0.1 184,626 + +0.1 184,626 + +1.2 184,626 + +1.0 184,626 + +0.6 184,627 - +0.6 184,627 - +1.4 184,629 + +0.3 184,630 - -0.3 184,653 + +0.2 184,690 - +0.2 184,851 + HMPREF1058_RS01190 0.21 -0.8 184,852 - HMPREF1058_RS01190 0.21 -0.6 184,852 - HMPREF1058_RS01190 0.21 -1.4 184,857 - HMPREF1058_RS01190 0.21 -1.3 184,923 + HMPREF1058_RS01190 0.29 +0.3 184,924 - HMPREF1058_RS01190 0.29 -0.3 184,958 - HMPREF1058_RS01190 0.33 +0.2 184,970 - HMPREF1058_RS01190 0.34 -0.4 184,970 - HMPREF1058_RS01190 0.34 -0.3 184,974 - HMPREF1058_RS01190 0.35 +0.6 185,062 - HMPREF1058_RS01190 0.44 +0.9 185,073 + HMPREF1058_RS01190 0.46 -0.8 185,077 - HMPREF1058_RS01190 0.46 -0.7 185,092 - HMPREF1058_RS01190 0.48 -0.2 185,096 + HMPREF1058_RS01190 0.48 +0.3 185,099 - HMPREF1058_RS01190 0.49 +0.3 185,163 - HMPREF1058_RS01190 0.56 -1.7 185,164 + HMPREF1058_RS01190 0.56 +0.4 185,166 + HMPREF1058_RS01190 0.56 -0.4 185,167 - HMPREF1058_RS01190 0.56 +0.2 185,169 + HMPREF1058_RS01190 0.57 +1.1 185,169 + HMPREF1058_RS01190 0.57 -1.3 185,169 + HMPREF1058_RS01190 0.57 -1.3 185,169 + HMPREF1058_RS01190 0.57 +0.2 185,169 + HMPREF1058_RS01190 0.57 +1.3 185,170 - HMPREF1058_RS01190 0.57 -1.8 185,173 + HMPREF1058_RS01190 0.57 +3.1 185,174 - HMPREF1058_RS01190 0.57 +0.6 185,176 - HMPREF1058_RS01190 0.57 -0.8 185,206 + HMPREF1058_RS01190 0.61 -0.5 185,206 + HMPREF1058_RS01190 0.61 +0.2 185,212 - HMPREF1058_RS01190 0.61 -0.5 185,270 + HMPREF1058_RS01190 0.68 -0.3 185,270 + HMPREF1058_RS01190 0.68 -1.3 185,316 - HMPREF1058_RS01190 0.73 -0.8 185,449 - HMPREF1058_RS01190 0.88 +0.9 185,449 - HMPREF1058_RS01190 0.88 +1.3 185,449 - HMPREF1058_RS01190 0.88 -1.5 185,473 + +2.2 185,473 + +0.7 185,474 - +0.2 185,478 - -0.2 185,478 - +0.2 185,547 - -0.3 185,548 + -0.1 185,549 - -1.4 185,549 - +0.5 185,552 + +1.2
Or see this region's nucleotide sequence