Experiment: H2 N-free with 2mM Thymine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00975 and MMP_RS00980 are separated by 142 nucleotides MMP_RS00980 and MMP_RS00985 are separated by 24 nucleotides MMP_RS00985 and MMP_RS00990 are separated by 112 nucleotides MMP_RS00990 and MMP_RS00995 are separated by 135 nucleotides
MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072
_RS00975
MMP_RS00980: MMP_RS00980 - hypothetical protein, at 183,215 to 183,679
_RS00980
MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070
_RS00985
MMP_RS00990: MMP_RS00990 - hypothetical protein, at 186,183 to 186,542
_RS00990
MMP_RS00995: MMP_RS00995 - phosphoribosylformylglycinamidine synthase I, at 186,678 to 187,487
_RS00995
Position (kb) 183
184
185
186
187 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 182.714 kb on - strand, within MMP_RS00975 at 182.715 kb on + strand, within MMP_RS00975 at 182.782 kb on - strand, within MMP_RS00975 at 182.895 kb on - strand, within MMP_RS00975 at 182.950 kb on + strand at 183.001 kb on - strand at 183.007 kb on - strand at 183.022 kb on + strand at 183.031 kb on + strand at 183.082 kb on - strand at 183.096 kb on - strand at 183.114 kb on - strand at 183.114 kb on - strand at 183.160 kb on - strand at 183.160 kb on - strand at 183.161 kb on + strand at 183.164 kb on - strand at 183.164 kb on - strand at 183.165 kb on + strand at 183.165 kb on + strand at 183.172 kb on + strand at 183.192 kb on - strand at 183.198 kb on - strand at 183.198 kb on - strand at 183.198 kb on - strand at 183.236 kb on - strand at 183.248 kb on + strand at 183.248 kb on + strand at 183.344 kb on - strand, within MMP_RS00980 at 183.345 kb on + strand, within MMP_RS00980 at 183.345 kb on + strand, within MMP_RS00980 at 183.350 kb on - strand, within MMP_RS00980 at 183.351 kb on + strand, within MMP_RS00980 at 183.370 kb on - strand, within MMP_RS00980 at 183.371 kb on + strand, within MMP_RS00980 at 183.467 kb on - strand, within MMP_RS00980 at 183.540 kb on - strand, within MMP_RS00980 at 183.552 kb on - strand, within MMP_RS00980 at 183.611 kb on - strand, within MMP_RS00980 at 183.611 kb on - strand, within MMP_RS00980 at 183.612 kb on + strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.614 kb on + strand, within MMP_RS00980 at 183.618 kb on - strand, within MMP_RS00980 at 183.619 kb on + strand, within MMP_RS00980 at 183.619 kb on + strand, within MMP_RS00980 at 183.634 kb on - strand at 183.689 kb on + strand at 183.689 kb on + strand at 183.800 kb on + strand at 183.813 kb on + strand at 183.923 kb on - strand at 184.097 kb on - strand, within MMP_RS00985 at 184.127 kb on - strand, within MMP_RS00985 at 184.128 kb on + strand, within MMP_RS00985 at 184.182 kb on + strand, within MMP_RS00985 at 184.291 kb on - strand, within MMP_RS00985 at 184.999 kb on - strand, within MMP_RS00985 at 185.004 kb on + strand, within MMP_RS00985 at 185.544 kb on - strand, within MMP_RS00985 at 185.545 kb on + strand, within MMP_RS00985 at 185.711 kb on - strand, within MMP_RS00985 at 185.885 kb on - strand at 186.029 kb on - strand at 186.174 kb on - strand at 186.415 kb on - strand, within MMP_RS00990 at 186.505 kb on - strand, within MMP_RS00990 at 186.560 kb on - strand at 186.574 kb on + strand at 186.625 kb on + strand at 186.683 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2mM Thymine remove 182,714 - MMP_RS00975 0.74 -0.3 182,715 + MMP_RS00975 0.74 +1.0 182,782 - MMP_RS00975 0.79 +0.5 182,895 - MMP_RS00975 0.87 -0.3 182,950 + +0.1 183,001 - +0.6 183,007 - +0.3 183,022 + -0.1 183,031 + +0.9 183,082 - +0.9 183,096 - -1.7 183,114 - -0.5 183,114 - +0.6 183,160 - -0.0 183,160 - -1.6 183,161 + +0.5 183,164 - +0.1 183,164 - +0.0 183,165 + -0.5 183,165 + +0.2 183,172 + +0.6 183,192 - +0.3 183,198 - -0.8 183,198 - -2.5 183,198 - +0.0 183,236 - +0.5 183,248 + -1.6 183,248 + -0.2 183,344 - MMP_RS00980 0.28 -0.2 183,345 + MMP_RS00980 0.28 -0.5 183,345 + MMP_RS00980 0.28 -0.3 183,350 - MMP_RS00980 0.29 +0.9 183,351 + MMP_RS00980 0.29 +0.7 183,370 - MMP_RS00980 0.33 -0.9 183,371 + MMP_RS00980 0.34 -0.6 183,467 - MMP_RS00980 0.54 +1.1 183,540 - MMP_RS00980 0.70 +1.1 183,552 - MMP_RS00980 0.72 +0.2 183,611 - MMP_RS00980 0.85 +1.1 183,611 - MMP_RS00980 0.85 +0.7 183,612 + MMP_RS00980 0.85 +0.8 183,613 - MMP_RS00980 0.86 -0.5 183,613 - MMP_RS00980 0.86 +0.9 183,613 - MMP_RS00980 0.86 +0.4 183,614 + MMP_RS00980 0.86 -1.4 183,618 - MMP_RS00980 0.87 -1.1 183,619 + MMP_RS00980 0.87 -0.1 183,619 + MMP_RS00980 0.87 -0.3 183,634 - +0.7 183,689 + +1.2 183,689 + +0.2 183,800 + +0.1 183,813 + +0.2 183,923 - -1.3 184,097 - MMP_RS00985 0.17 -3.8 184,127 - MMP_RS00985 0.18 -0.9 184,128 + MMP_RS00985 0.18 -0.7 184,182 + MMP_RS00985 0.20 -1.8 184,291 - MMP_RS00985 0.25 -4.3 184,999 - MMP_RS00985 0.55 -3.6 185,004 + MMP_RS00985 0.55 -3.9 185,544 - MMP_RS00985 0.78 -1.4 185,545 + MMP_RS00985 0.78 -1.5 185,711 - MMP_RS00985 0.85 -5.2 185,885 - -2.3 186,029 - -4.6 186,174 - -0.0 186,415 - MMP_RS00990 0.64 +1.2 186,505 - MMP_RS00990 0.89 -0.4 186,560 - +1.0 186,574 + +0.5 186,625 + +0.3 186,683 - -2.0
Or see this region's nucleotide sequence