Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01735

Experiment: H2 N-free with 10mM Thymidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01725 and MMP_RS01730 are separated by 50 nucleotidesMMP_RS01730 and MMP_RS01735 are separated by 66 nucleotidesMMP_RS01735 and MMP_RS01740 are separated by 206 nucleotides MMP_RS01725: MMP_RS01725 - class I SAM-dependent methyltransferase family protein, at 319,643 to 320,671 _RS01725 MMP_RS01730: MMP_RS01730 - hypothetical protein, at 320,722 to 321,102 _RS01730 MMP_RS01735: MMP_RS01735 - type II glyceraldehyde-3-phosphate dehydrogenase, at 321,169 to 322,191 _RS01735 MMP_RS01740: MMP_RS01740 - methionine--tRNA ligase, at 322,398 to 324,389 _RS01740 Position (kb) 321 322 323Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 320.173 kb on + strand, within MMP_RS01725at 320.432 kb on + strand, within MMP_RS01725at 320.584 kb on - strandat 320.594 kb on + strandat 320.650 kb on - strandat 320.695 kb on + strandat 320.696 kb on - strandat 320.697 kb on + strandat 320.698 kb on - strandat 320.698 kb on - strandat 320.709 kb on - strandat 320.734 kb on + strandat 320.743 kb on + strandat 320.844 kb on - strandat 321.020 kb on + strandat 321.023 kb on - strandat 321.024 kb on + strandat 321.308 kb on + strandat 321.319 kb on - strandat 321.951 kb on - strandat 321.952 kb on + strandat 322.226 kb on - strandat 322.258 kb on - strandat 322.262 kb on - strandat 322.265 kb on + strandat 322.271 kb on - strandat 322.272 kb on + strandat 322.275 kb on - strandat 322.276 kb on + strandat 322.277 kb on - strandat 322.280 kb on - strandat 322.285 kb on - strandat 322.286 kb on + strandat 322.287 kb on - strandat 322.288 kb on + strandat 322.327 kb on + strandat 322.328 kb on - strandat 322.409 kb on + strandat 322.413 kb on + strandat 322.428 kb on - strandat 322.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Thymidine
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320,173 + MMP_RS01725 0.52 -2.6
320,432 + MMP_RS01725 0.77 -3.8
320,584 - -3.1
320,594 + -1.1
320,650 - -5.8
320,695 + -0.3
320,696 - +0.0
320,697 + +0.2
320,698 - +0.5
320,698 - +0.3
320,709 - +0.9
320,734 + -1.0
320,743 + -0.3
320,844 - -2.8
321,020 + -4.2
321,023 - -6.3
321,024 + -4.6
321,308 + -3.3
321,319 - -0.4
321,951 - -2.9
321,952 + -4.8
322,226 - -2.7
322,258 - +1.3
322,262 - -0.0
322,265 + -1.6
322,271 - -0.1
322,272 + -1.2
322,275 - +0.7
322,276 + -0.5
322,277 - -1.1
322,280 - +0.4
322,285 - +0.6
322,286 + +0.6
322,287 - +0.1
322,288 + +0.1
322,327 + -0.8
322,328 - -2.7
322,409 + -2.4
322,413 + -4.3
322,428 - -3.9
322,920 + -0.8

Or see this region's nucleotide sequence