Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08775

Experiment: H2 N-free with 10mM L-Citrulline

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08985 and MMP_RS08770 are separated by 22 nucleotidesMMP_RS08770 and MMP_RS08775 overlap by 4 nucleotidesMMP_RS08775 and MMP_RS08780 are separated by 9 nucleotidesMMP_RS08780 and MMP_RS08785 are separated by 5 nucleotidesMMP_RS08785 and MMP_RS08790 are separated by 8 nucleotides MMP_RS08985: MMP_RS08985 - tRNA-Sec, at 1,644,096 to 1,644,185 _RS08985 MMP_RS08770: MMP_RS08770 - hypothetical protein, at 1,644,208 to 1,645,104 _RS08770 MMP_RS08775: MMP_RS08775 - methanogenesis marker 9 domain-containing protein, at 1,645,101 to 1,645,556 _RS08775 MMP_RS08780: MMP_RS08780 - 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, at 1,645,566 to 1,646,231 _RS08780 MMP_RS08785: MMP_RS08785 - RNA-protein complex protein Nop10, at 1,646,237 to 1,646,392 _RS08785 MMP_RS08790: MMP_RS08790 - translation initiation factor IF-2 subunit alpha, at 1,646,401 to 1,647,198 _RS08790 Position (kb) 1645 1646Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1644.261 kb on + strandat 1644.288 kb on - strandat 1644.408 kb on + strand, within MMP_RS08770at 1644.417 kb on + strand, within MMP_RS08770at 1644.441 kb on - strand, within MMP_RS08770at 1644.563 kb on - strand, within MMP_RS08770at 1644.571 kb on + strand, within MMP_RS08770at 1644.683 kb on - strand, within MMP_RS08770at 1644.684 kb on + strand, within MMP_RS08770at 1644.710 kb on - strand, within MMP_RS08770at 1644.769 kb on + strand, within MMP_RS08770at 1644.861 kb on + strand, within MMP_RS08770at 1644.867 kb on - strand, within MMP_RS08770at 1644.870 kb on + strand, within MMP_RS08770at 1645.014 kb on - strand, within MMP_RS08770at 1645.088 kb on - strandat 1645.274 kb on + strand, within MMP_RS08775at 1645.274 kb on + strand, within MMP_RS08775at 1645.311 kb on + strand, within MMP_RS08775at 1645.416 kb on - strand, within MMP_RS08775at 1645.513 kb on + strandat 1645.556 kb on - strandat 1645.556 kb on - strandat 1645.559 kb on + strandat 1645.567 kb on - strandat 1645.740 kb on - strandat 1645.740 kb on - strandat 1645.804 kb on + strandat 1645.804 kb on + strandat 1645.838 kb on - strandat 1645.850 kb on - strandat 1645.851 kb on + strandat 1645.917 kb on - strandat 1645.919 kb on - strandat 1645.967 kb on + strandat 1645.980 kb on + strandat 1646.021 kb on + strandat 1646.072 kb on - strandat 1646.095 kb on - strandat 1646.175 kb on - strandat 1646.175 kb on - strandat 1646.231 kb on - strandat 1646.277 kb on - strand, within MMP_RS08785at 1646.524 kb on - strand, within MMP_RS08790at 1646.550 kb on + strand, within MMP_RS08790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
remove
1,644,261 + -0.9
1,644,288 - +0.5
1,644,408 + MMP_RS08770 0.22 -0.1
1,644,417 + MMP_RS08770 0.23 -0.9
1,644,441 - MMP_RS08770 0.26 +0.9
1,644,563 - MMP_RS08770 0.40 -0.3
1,644,571 + MMP_RS08770 0.40 +0.7
1,644,683 - MMP_RS08770 0.53 +1.0
1,644,684 + MMP_RS08770 0.53 -0.0
1,644,710 - MMP_RS08770 0.56 +1.1
1,644,769 + MMP_RS08770 0.63 +1.5
1,644,861 + MMP_RS08770 0.73 +0.6
1,644,867 - MMP_RS08770 0.73 +0.8
1,644,870 + MMP_RS08770 0.74 -0.3
1,645,014 - MMP_RS08770 0.90 -0.1
1,645,088 - +1.0
1,645,274 + MMP_RS08775 0.38 +1.2
1,645,274 + MMP_RS08775 0.38 +0.5
1,645,311 + MMP_RS08775 0.46 +0.4
1,645,416 - MMP_RS08775 0.69 +1.0
1,645,513 + -1.3
1,645,556 - +0.2
1,645,556 - -1.6
1,645,559 + +0.5
1,645,567 - -0.7
1,645,740 - -3.3
1,645,740 - -3.3
1,645,804 + -1.3
1,645,804 + -4.1
1,645,838 - -3.5
1,645,850 - -3.2
1,645,851 + -2.9
1,645,917 - -3.1
1,645,919 - -3.7
1,645,967 + -3.5
1,645,980 + -0.7
1,646,021 + -1.6
1,646,072 - -2.3
1,646,095 - -1.6
1,646,175 - -1.7
1,646,175 - -5.3
1,646,231 - -1.8
1,646,277 - MMP_RS08785 0.26 -1.8
1,646,524 - MMP_RS08790 0.15 +0.1
1,646,550 + MMP_RS08790 0.19 -4.1

Or see this region's nucleotide sequence