Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08760

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08755 and MMP_RS08760 are separated by 170 nucleotidesMMP_RS08760 and MMP_RS08765 are separated by 11 nucleotides MMP_RS08755: MMP_RS08755 - sodium:solute symporter family protein, at 1,640,720 to 1,642,321 _RS08755 MMP_RS08760: MMP_RS08760 - hypothetical protein, at 1,642,492 to 1,642,974 _RS08760 MMP_RS08765: MMP_RS08765 - homoserine dehydrogenase, at 1,642,986 to 1,643,999 _RS08765 Position (kb) 1642 1643Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1641.615 kb on + strand, within MMP_RS08755at 1641.652 kb on - strand, within MMP_RS08755at 1641.838 kb on - strand, within MMP_RS08755at 1641.855 kb on + strand, within MMP_RS08755at 1641.891 kb on - strand, within MMP_RS08755at 1641.895 kb on - strand, within MMP_RS08755at 1641.896 kb on + strand, within MMP_RS08755at 1642.091 kb on + strand, within MMP_RS08755at 1642.260 kb on - strandat 1642.423 kb on + strandat 1642.438 kb on + strandat 1642.452 kb on - strandat 1642.453 kb on + strandat 1642.453 kb on + strandat 1642.455 kb on - strandat 1642.459 kb on - strandat 1642.460 kb on + strandat 1642.460 kb on + strandat 1642.465 kb on + strandat 1642.632 kb on + strand, within MMP_RS08760at 1642.675 kb on + strand, within MMP_RS08760at 1642.890 kb on + strand, within MMP_RS08760at 1643.153 kb on + strandat 1643.315 kb on + strandat 1643.379 kb on + strandat 1643.425 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,641,615 + MMP_RS08755 0.56 +0.3
1,641,652 - MMP_RS08755 0.58 -0.1
1,641,838 - MMP_RS08755 0.70 -0.1
1,641,855 + MMP_RS08755 0.71 +0.6
1,641,891 - MMP_RS08755 0.73 -0.7
1,641,895 - MMP_RS08755 0.73 -0.5
1,641,896 + MMP_RS08755 0.73 +1.1
1,642,091 + MMP_RS08755 0.86 +0.6
1,642,260 - +1.7
1,642,423 + +0.9
1,642,438 + +0.8
1,642,452 - -2.5
1,642,453 + -0.2
1,642,453 + +1.1
1,642,455 - -3.2
1,642,459 - -2.7
1,642,460 + +1.1
1,642,460 + +1.7
1,642,465 + +0.8
1,642,632 + MMP_RS08760 0.29 +0.9
1,642,675 + MMP_RS08760 0.38 +0.8
1,642,890 + MMP_RS08760 0.82 +1.1
1,643,153 + -2.5
1,643,315 + -1.6
1,643,379 + -3.5
1,643,425 + -4.9

Or see this region's nucleotide sequence