Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08415

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08405 and MMP_RS08410 are separated by 10 nucleotidesMMP_RS08410 and MMP_RS08415 are separated by 186 nucleotidesMMP_RS08415 and MMP_RS08420 are separated by 9 nucleotides MMP_RS08405: MMP_RS08405 - MFS transporter, at 1,577,536 to 1,578,906 _RS08405 MMP_RS08410: MMP_RS08410 - DUF169 domain-containing protein, at 1,578,917 to 1,579,609 _RS08410 MMP_RS08415: MMP_RS08415 - radical SAM protein, at 1,579,796 to 1,580,659 _RS08415 MMP_RS08420: MMP_RS08420 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,580,669 to 1,581,871 _RS08420 Position (kb) 1579 1580 1581Strain fitness (log2 ratio) -3 -2 -1 0 1at 1578.904 kb on - strandat 1578.908 kb on - strandat 1579.187 kb on - strand, within MMP_RS08410at 1579.194 kb on + strand, within MMP_RS08410at 1579.396 kb on - strand, within MMP_RS08410at 1579.397 kb on + strand, within MMP_RS08410at 1579.524 kb on + strand, within MMP_RS08410at 1579.532 kb on + strand, within MMP_RS08410at 1579.611 kb on - strandat 1579.611 kb on - strandat 1579.611 kb on - strandat 1579.612 kb on + strandat 1579.675 kb on - strandat 1579.676 kb on + strandat 1579.676 kb on + strandat 1579.720 kb on + strandat 1579.720 kb on + strandat 1579.720 kb on + strandat 1579.723 kb on - strandat 1579.724 kb on + strandat 1579.724 kb on + strandat 1579.725 kb on - strandat 1579.725 kb on - strandat 1579.725 kb on - strandat 1579.727 kb on - strandat 1579.727 kb on - strandat 1579.727 kb on - strandat 1579.728 kb on + strandat 1579.728 kb on + strandat 1579.730 kb on - strandat 1579.730 kb on - strandat 1579.733 kb on - strandat 1579.734 kb on + strandat 1579.736 kb on + strandat 1580.269 kb on + strand, within MMP_RS08415at 1580.322 kb on + strand, within MMP_RS08415at 1580.485 kb on + strand, within MMP_RS08415at 1580.774 kb on + strandat 1580.774 kb on + strandat 1580.800 kb on - strandat 1580.959 kb on + strandat 1581.554 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,578,904 - +0.9
1,578,908 - +0.6
1,579,187 - MMP_RS08410 0.39 +0.4
1,579,194 + MMP_RS08410 0.40 +1.4
1,579,396 - MMP_RS08410 0.69 +0.7
1,579,397 + MMP_RS08410 0.69 +0.5
1,579,524 + MMP_RS08410 0.88 -0.7
1,579,532 + MMP_RS08410 0.89 +0.5
1,579,611 - +0.4
1,579,611 - -0.3
1,579,611 - -0.6
1,579,612 + +0.8
1,579,675 - +0.2
1,579,676 + +0.9
1,579,676 + +0.6
1,579,720 + +0.4
1,579,720 + -0.3
1,579,720 + +0.6
1,579,723 - +0.3
1,579,724 + +1.7
1,579,724 + +1.1
1,579,725 - +0.1
1,579,725 - +0.2
1,579,725 - +0.7
1,579,727 - -0.2
1,579,727 - +0.2
1,579,727 - -0.2
1,579,728 + +0.7
1,579,728 + +0.4
1,579,730 - +0.4
1,579,730 - -0.1
1,579,733 - -0.6
1,579,734 + +1.2
1,579,736 + +0.1
1,580,269 + MMP_RS08415 0.55 +0.0
1,580,322 + MMP_RS08415 0.61 +0.7
1,580,485 + MMP_RS08415 0.80 +1.1
1,580,774 + -2.9
1,580,774 + -1.6
1,580,800 - +0.1
1,580,959 + -3.5
1,581,554 + -3.4

Or see this region's nucleotide sequence