Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08390

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08385 and MMP_RS08390 are separated by 114 nucleotidesMMP_RS08390 and MMP_RS08395 are separated by 13 nucleotidesMMP_RS08395 and MMP_RS08400 are separated by 113 nucleotides MMP_RS08385: MMP_RS08385 - ABC transporter substrate-binding protein, at 1,575,110 to 1,575,832 _RS08385 MMP_RS08390: MMP_RS08390 - DUF5400 domain-containing protein, at 1,575,947 to 1,576,276 _RS08390 MMP_RS08395: MMP_RS08395 - DsrE family protein, at 1,576,290 to 1,577,105 _RS08395 MMP_RS08400: MMP_RS08400 - MJ0307 family thioredoxin, at 1,577,219 to 1,577,461 _RS08400 Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -1 0 1 2at 1575.011 kb on + strandat 1575.037 kb on + strandat 1575.056 kb on - strandat 1575.163 kb on - strandat 1575.223 kb on - strand, within MMP_RS08385at 1575.272 kb on - strand, within MMP_RS08385at 1575.326 kb on - strand, within MMP_RS08385at 1575.405 kb on - strand, within MMP_RS08385at 1575.556 kb on - strand, within MMP_RS08385at 1575.556 kb on - strand, within MMP_RS08385at 1575.604 kb on - strand, within MMP_RS08385at 1575.622 kb on + strand, within MMP_RS08385at 1575.752 kb on + strand, within MMP_RS08385at 1575.919 kb on - strandat 1575.919 kb on - strandat 1575.931 kb on - strandat 1575.931 kb on - strandat 1575.949 kb on + strandat 1575.974 kb on - strandat 1575.974 kb on - strandat 1575.975 kb on + strandat 1575.978 kb on + strandat 1576.011 kb on - strand, within MMP_RS08390at 1576.049 kb on + strand, within MMP_RS08390at 1576.128 kb on + strand, within MMP_RS08390at 1576.150 kb on - strand, within MMP_RS08390at 1576.247 kb on - strandat 1576.247 kb on - strandat 1576.254 kb on + strandat 1576.414 kb on + strand, within MMP_RS08395at 1576.635 kb on + strand, within MMP_RS08395at 1576.638 kb on - strand, within MMP_RS08395at 1576.639 kb on + strand, within MMP_RS08395at 1576.738 kb on + strand, within MMP_RS08395at 1576.899 kb on + strand, within MMP_RS08395at 1577.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,575,011 + +1.1
1,575,037 + +0.4
1,575,056 - +0.8
1,575,163 - +0.8
1,575,223 - MMP_RS08385 0.16 -1.2
1,575,272 - MMP_RS08385 0.22 +0.0
1,575,326 - MMP_RS08385 0.30 +1.0
1,575,405 - MMP_RS08385 0.41 -0.6
1,575,556 - MMP_RS08385 0.62 -1.7
1,575,556 - MMP_RS08385 0.62 +0.7
1,575,604 - MMP_RS08385 0.68 -0.6
1,575,622 + MMP_RS08385 0.71 +0.4
1,575,752 + MMP_RS08385 0.89 +0.3
1,575,919 - +0.9
1,575,919 - +1.0
1,575,931 - +1.3
1,575,931 - -0.3
1,575,949 + +0.0
1,575,974 - -1.0
1,575,974 - +1.2
1,575,975 + -0.3
1,575,978 + +0.5
1,576,011 - MMP_RS08390 0.19 +1.1
1,576,049 + MMP_RS08390 0.31 +0.2
1,576,128 + MMP_RS08390 0.55 +0.8
1,576,150 - MMP_RS08390 0.62 +0.8
1,576,247 - +1.8
1,576,247 - +0.8
1,576,254 + +0.8
1,576,414 + MMP_RS08395 0.15 +0.6
1,576,635 + MMP_RS08395 0.42 +0.4
1,576,638 - MMP_RS08395 0.43 +0.5
1,576,639 + MMP_RS08395 0.43 -1.0
1,576,738 + MMP_RS08395 0.55 -0.1
1,576,899 + MMP_RS08395 0.75 -0.0
1,577,091 - -0.3

Or see this region's nucleotide sequence