Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08265

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08255 and MMP_RS08260 are separated by 10 nucleotidesMMP_RS08260 and MMP_RS08265 are separated by 122 nucleotidesMMP_RS08265 and MMP_RS08270 are separated by 297 nucleotides MMP_RS08255: MMP_RS08255 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 1,553,771 to 1,554,961 _RS08255 MMP_RS08260: MMP_RS08260 - DUF99 family protein, at 1,554,972 to 1,555,523 _RS08260 MMP_RS08265: MMP_RS08265 - rubrerythrin, at 1,555,646 to 1,555,954 _RS08265 MMP_RS08270: MMP_RS08270 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase, at 1,556,252 to 1,557,160 _RS08270 Position (kb) 1555 1556Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1554.733 kb on + strandat 1554.817 kb on + strandat 1554.846 kb on + strandat 1554.949 kb on + strandat 1554.949 kb on + strandat 1555.059 kb on - strand, within MMP_RS08260at 1555.059 kb on - strand, within MMP_RS08260at 1555.060 kb on + strand, within MMP_RS08260at 1555.074 kb on + strand, within MMP_RS08260at 1555.079 kb on + strand, within MMP_RS08260at 1555.081 kb on - strand, within MMP_RS08260at 1555.082 kb on + strand, within MMP_RS08260at 1555.240 kb on + strand, within MMP_RS08260at 1555.240 kb on + strand, within MMP_RS08260at 1555.388 kb on - strand, within MMP_RS08260at 1555.389 kb on + strand, within MMP_RS08260at 1555.403 kb on - strand, within MMP_RS08260at 1555.411 kb on - strand, within MMP_RS08260at 1555.560 kb on + strandat 1555.568 kb on - strandat 1555.569 kb on + strandat 1555.572 kb on - strandat 1555.573 kb on + strandat 1555.573 kb on + strandat 1555.595 kb on + strandat 1555.598 kb on - strandat 1555.621 kb on + strandat 1555.645 kb on - strandat 1555.756 kb on + strand, within MMP_RS08265at 1555.764 kb on + strand, within MMP_RS08265at 1555.766 kb on + strand, within MMP_RS08265at 1555.821 kb on - strand, within MMP_RS08265at 1555.953 kb on + strandat 1555.958 kb on + strandat 1555.961 kb on - strandat 1555.962 kb on + strandat 1555.966 kb on - strandat 1555.967 kb on + strandat 1555.967 kb on + strandat 1555.991 kb on + strandat 1556.002 kb on - strandat 1556.003 kb on + strandat 1556.068 kb on - strandat 1556.068 kb on - strandat 1556.069 kb on + strandat 1556.069 kb on + strandat 1556.069 kb on + strandat 1556.069 kb on + strandat 1556.194 kb on - strandat 1556.204 kb on + strandat 1556.269 kb on + strandat 1556.889 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,554,733 + -3.6
1,554,817 + -1.8
1,554,846 + -3.5
1,554,949 + -0.0
1,554,949 + +1.4
1,555,059 - MMP_RS08260 0.16 +1.1
1,555,059 - MMP_RS08260 0.16 +1.8
1,555,060 + MMP_RS08260 0.16 +3.8
1,555,074 + MMP_RS08260 0.18 -0.3
1,555,079 + MMP_RS08260 0.19 +0.0
1,555,081 - MMP_RS08260 0.20 +0.7
1,555,082 + MMP_RS08260 0.20 -0.1
1,555,240 + MMP_RS08260 0.49 +1.6
1,555,240 + MMP_RS08260 0.49 +1.1
1,555,388 - MMP_RS08260 0.75 +0.6
1,555,389 + MMP_RS08260 0.76 +0.8
1,555,403 - MMP_RS08260 0.78 +0.5
1,555,411 - MMP_RS08260 0.80 +0.3
1,555,560 + -0.7
1,555,568 - +1.0
1,555,569 + -1.9
1,555,572 - +0.7
1,555,573 + +1.1
1,555,573 + +2.0
1,555,595 + -0.2
1,555,598 - -0.4
1,555,621 + +1.5
1,555,645 - +0.6
1,555,756 + MMP_RS08265 0.36 +0.8
1,555,764 + MMP_RS08265 0.38 +0.2
1,555,766 + MMP_RS08265 0.39 +0.6
1,555,821 - MMP_RS08265 0.57 +0.8
1,555,953 + -0.9
1,555,958 + +0.7
1,555,961 - +0.2
1,555,962 + -0.9
1,555,966 - +0.3
1,555,967 + -0.4
1,555,967 + -0.7
1,555,991 + +0.8
1,556,002 - +0.3
1,556,003 + +0.2
1,556,068 - +0.2
1,556,068 - +0.6
1,556,069 + +0.6
1,556,069 + +0.7
1,556,069 + +0.3
1,556,069 + -2.1
1,556,194 - -0.6
1,556,204 + -3.4
1,556,269 + -2.9
1,556,889 + -2.7

Or see this region's nucleotide sequence