Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08070

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08065 and MMP_RS08070 are separated by 86 nucleotidesMMP_RS08070 and MMP_RS08075 overlap by 23 nucleotidesMMP_RS08075 and MMP_RS08080 are separated by 10 nucleotides MMP_RS08065: MMP_RS08065 - tetrahydromethanopterin S-methyltransferase subunit H, at 1,519,462 to 1,520,421 _RS08065 MMP_RS08070: MMP_RS08070 - DUF2096 domain-containing protein, at 1,520,508 to 1,521,041 _RS08070 MMP_RS08075: MMP_RS08075 - DUF749 domain-containing protein, at 1,521,019 to 1,521,327 _RS08075 MMP_RS08080: MMP_RS08080 - YchF/TatD family DNA exonuclease, at 1,521,338 to 1,522,093 _RS08080 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -1 0 1at 1520.424 kb on + strandat 1520.488 kb on - strandat 1520.488 kb on - strandat 1520.488 kb on - strandat 1520.489 kb on + strandat 1520.489 kb on + strandat 1520.489 kb on + strandat 1520.489 kb on + strandat 1520.489 kb on + strandat 1520.489 kb on + strandat 1520.489 kb on + strandat 1520.510 kb on + strandat 1520.559 kb on - strandat 1520.639 kb on - strand, within MMP_RS08070at 1520.670 kb on - strand, within MMP_RS08070at 1520.727 kb on + strand, within MMP_RS08070at 1520.838 kb on - strand, within MMP_RS08070at 1520.909 kb on + strand, within MMP_RS08070at 1520.912 kb on + strand, within MMP_RS08070at 1520.915 kb on - strand, within MMP_RS08070at 1521.003 kb on - strandat 1521.004 kb on + strandat 1521.004 kb on + strandat 1521.151 kb on - strand, within MMP_RS08075at 1521.152 kb on + strand, within MMP_RS08075at 1521.158 kb on - strand, within MMP_RS08075at 1521.186 kb on - strand, within MMP_RS08075at 1521.190 kb on + strand, within MMP_RS08075at 1521.348 kb on - strandat 1521.350 kb on - strandat 1521.369 kb on - strandat 1521.370 kb on + strandat 1521.370 kb on + strandat 1521.370 kb on + strandat 1521.373 kb on - strandat 1521.493 kb on - strand, within MMP_RS08080at 1521.493 kb on - strand, within MMP_RS08080at 1521.564 kb on + strand, within MMP_RS08080at 1521.572 kb on + strand, within MMP_RS08080at 1521.577 kb on + strand, within MMP_RS08080at 1521.755 kb on - strand, within MMP_RS08080at 1521.849 kb on - strand, within MMP_RS08080at 1521.868 kb on - strand, within MMP_RS08080at 1521.881 kb on + strand, within MMP_RS08080at 1521.909 kb on + strand, within MMP_RS08080at 1521.977 kb on - strand, within MMP_RS08080at 1522.010 kb on - strand, within MMP_RS08080at 1522.015 kb on - strand, within MMP_RS08080at 1522.015 kb on - strand, within MMP_RS08080

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,520,424 + -0.9
1,520,488 - -0.2
1,520,488 - +0.6
1,520,488 - -1.4
1,520,489 + +0.5
1,520,489 + +0.5
1,520,489 + +0.3
1,520,489 + +0.4
1,520,489 + +0.8
1,520,489 + +0.5
1,520,489 + -1.0
1,520,510 + -0.8
1,520,559 - +0.7
1,520,639 - MMP_RS08070 0.25 +1.3
1,520,670 - MMP_RS08070 0.30 +0.2
1,520,727 + MMP_RS08070 0.41 +0.3
1,520,838 - MMP_RS08070 0.62 +1.6
1,520,909 + MMP_RS08070 0.75 -0.0
1,520,912 + MMP_RS08070 0.76 -0.6
1,520,915 - MMP_RS08070 0.76 +0.5
1,521,003 - +0.9
1,521,004 + +0.7
1,521,004 + +0.9
1,521,151 - MMP_RS08075 0.43 -0.4
1,521,152 + MMP_RS08075 0.43 +1.1
1,521,158 - MMP_RS08075 0.45 +0.5
1,521,186 - MMP_RS08075 0.54 +1.6
1,521,190 + MMP_RS08075 0.55 -0.1
1,521,348 - +1.0
1,521,350 - +0.5
1,521,369 - +0.7
1,521,370 + -0.6
1,521,370 + +1.2
1,521,370 + -0.8
1,521,373 - -0.5
1,521,493 - MMP_RS08080 0.21 -0.0
1,521,493 - MMP_RS08080 0.21 +0.3
1,521,564 + MMP_RS08080 0.30 +1.0
1,521,572 + MMP_RS08080 0.31 +1.1
1,521,577 + MMP_RS08080 0.32 -0.4
1,521,755 - MMP_RS08080 0.55 +0.5
1,521,849 - MMP_RS08080 0.68 +0.2
1,521,868 - MMP_RS08080 0.70 +0.8
1,521,881 + MMP_RS08080 0.72 -1.6
1,521,909 + MMP_RS08080 0.76 +0.4
1,521,977 - MMP_RS08080 0.85 +0.5
1,522,010 - MMP_RS08080 0.89 -0.5
1,522,015 - MMP_RS08080 0.90 -0.8
1,522,015 - MMP_RS08080 0.90 +0.7

Or see this region's nucleotide sequence