Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07890

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07885 and MMP_RS07890 are separated by 3 nucleotidesMMP_RS07890 and MMP_RS07895 are separated by 207 nucleotidesMMP_RS07895 and MMP_RS07900 are separated by 23 nucleotides MMP_RS07885: MMP_RS07885 - tripartite tricarboxylate transporter permease, at 1,492,980 to 1,494,173 _RS07885 MMP_RS07890: MMP_RS07890 - OB-fold nucleic acid binding domain-containing protein, at 1,494,177 to 1,494,788 _RS07890 MMP_RS07895: MMP_RS07895 - cytochrome c, at 1,494,996 to 1,495,451 _RS07895 MMP_RS07900: MMP_RS07900 - YeeE/YedE family protein, at 1,495,475 to 1,495,945 _RS07900 Position (kb) 1494 1495Strain fitness (log2 ratio) -2 -1 0 1at 1493.290 kb on - strand, within MMP_RS07885at 1493.434 kb on + strand, within MMP_RS07885at 1493.456 kb on - strand, within MMP_RS07885at 1494.162 kb on - strandat 1494.200 kb on - strandat 1494.200 kb on - strandat 1494.201 kb on + strandat 1494.323 kb on + strand, within MMP_RS07890at 1494.678 kb on + strand, within MMP_RS07890at 1494.771 kb on - strandat 1494.772 kb on + strandat 1494.837 kb on + strandat 1494.904 kb on - strandat 1494.905 kb on + strandat 1494.905 kb on + strandat 1494.970 kb on - strandat 1495.026 kb on + strandat 1495.140 kb on + strand, within MMP_RS07895at 1495.211 kb on + strand, within MMP_RS07895at 1495.292 kb on + strand, within MMP_RS07895at 1495.292 kb on + strand, within MMP_RS07895at 1495.433 kb on + strandat 1495.578 kb on + strand, within MMP_RS07900at 1495.591 kb on - strand, within MMP_RS07900at 1495.649 kb on + strand, within MMP_RS07900

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,493,290 - MMP_RS07885 0.26 +0.4
1,493,434 + MMP_RS07885 0.38 +0.2
1,493,456 - MMP_RS07885 0.40 +0.0
1,494,162 - +0.9
1,494,200 - -0.1
1,494,200 - +0.3
1,494,201 + +0.6
1,494,323 + MMP_RS07890 0.24 +0.5
1,494,678 + MMP_RS07890 0.82 +0.9
1,494,771 - -0.4
1,494,772 + +1.5
1,494,837 + +0.2
1,494,904 - -0.3
1,494,905 + +0.7
1,494,905 + +1.3
1,494,970 - -1.1
1,495,026 + +0.1
1,495,140 + MMP_RS07895 0.32 -0.1
1,495,211 + MMP_RS07895 0.47 -0.9
1,495,292 + MMP_RS07895 0.65 +0.2
1,495,292 + MMP_RS07895 0.65 +1.5
1,495,433 + +0.7
1,495,578 + MMP_RS07900 0.22 -0.8
1,495,591 - MMP_RS07900 0.25 -2.3
1,495,649 + MMP_RS07900 0.37 -0.6

Or see this region's nucleotide sequence