Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07840

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07835 and MMP_RS07840 are separated by 51 nucleotidesMMP_RS07840 and MMP_RS07845 are separated by 42 nucleotides MMP_RS07835: MMP_RS07835 - TldD/PmbA family protein, at 1,484,018 to 1,485,280 _RS07835 MMP_RS07840: MMP_RS07840 - ribonuclease III, at 1,485,332 to 1,486,021 _RS07840 MMP_RS07845: MMP_RS07845 - LL-diaminopimelate aminotransferase, at 1,486,064 to 1,487,314 _RS07845 Position (kb) 1485 1486 1487Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1484.876 kb on + strand, within MMP_RS07835at 1484.998 kb on - strand, within MMP_RS07835at 1485.042 kb on + strand, within MMP_RS07835at 1485.047 kb on - strand, within MMP_RS07835at 1485.123 kb on + strand, within MMP_RS07835at 1485.313 kb on - strandat 1485.370 kb on + strandat 1485.385 kb on + strandat 1485.395 kb on + strandat 1485.566 kb on - strand, within MMP_RS07840at 1485.761 kb on + strand, within MMP_RS07840at 1486.083 kb on + strandat 1486.477 kb on + strand, within MMP_RS07845at 1486.557 kb on - strand, within MMP_RS07845at 1486.755 kb on - strand, within MMP_RS07845

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,484,876 + MMP_RS07835 0.68 +0.4
1,484,998 - MMP_RS07835 0.78 +1.1
1,485,042 + MMP_RS07835 0.81 +2.0
1,485,047 - MMP_RS07835 0.81 +0.3
1,485,123 + MMP_RS07835 0.87 +1.2
1,485,313 - +1.1
1,485,370 + +0.3
1,485,385 + -0.7
1,485,395 + +0.1
1,485,566 - MMP_RS07840 0.34 +0.4
1,485,761 + MMP_RS07840 0.62 +1.5
1,486,083 + -5.1
1,486,477 + MMP_RS07845 0.33 -4.9
1,486,557 - MMP_RS07845 0.39 -3.9
1,486,755 - MMP_RS07845 0.55 -4.9

Or see this region's nucleotide sequence