Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07765

Experiment: H2 N-free with 10mM L-Citrulline

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS07760 and MMP_RS07765 are separated by 177 nucleotidesMMP_RS07765 and MMP_RS07770 are separated by 222 nucleotides MMP_RS07760: MMP_RS07760 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,467,465 to 1,468,760 _RS07760 MMP_RS07765: MMP_RS07765 - sodium:alanine symporter family protein, at 1,468,938 to 1,470,299 _RS07765 MMP_RS07770: MMP_RS07770 - alanine racemase, at 1,470,522 to 1,471,643 _RS07770 Position (kb) 1468 1469 1470 1471Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1468.156 kb on + strandat 1468.242 kb on - strandat 1468.802 kb on - strandat 1468.829 kb on + strandat 1468.829 kb on + strandat 1468.845 kb on + strandat 1468.924 kb on + strandat 1468.965 kb on - strandat 1469.132 kb on + strand, within MMP_RS07765at 1469.361 kb on + strand, within MMP_RS07765at 1469.364 kb on - strand, within MMP_RS07765at 1469.365 kb on + strand, within MMP_RS07765at 1469.566 kb on + strand, within MMP_RS07765at 1469.666 kb on - strand, within MMP_RS07765at 1469.684 kb on - strand, within MMP_RS07765at 1469.699 kb on - strand, within MMP_RS07765at 1469.740 kb on + strand, within MMP_RS07765at 1469.945 kb on - strand, within MMP_RS07765at 1470.037 kb on - strand, within MMP_RS07765at 1470.169 kb on - strandat 1470.198 kb on - strandat 1470.199 kb on + strandat 1470.247 kb on - strandat 1470.247 kb on - strandat 1470.247 kb on - strandat 1470.248 kb on + strandat 1470.248 kb on + strandat 1470.248 kb on + strandat 1470.270 kb on + strandat 1470.278 kb on - strandat 1470.371 kb on - strandat 1470.372 kb on + strandat 1470.372 kb on + strandat 1470.388 kb on + strandat 1470.388 kb on + strandat 1470.444 kb on - strandat 1470.445 kb on + strandat 1470.453 kb on - strandat 1470.458 kb on - strandat 1470.461 kb on - strandat 1470.461 kb on - strandat 1470.524 kb on + strandat 1470.528 kb on - strandat 1470.528 kb on - strandat 1470.528 kb on - strandat 1470.532 kb on - strandat 1470.532 kb on - strandat 1470.532 kb on - strandat 1470.532 kb on - strandat 1470.535 kb on + strandat 1470.535 kb on + strandat 1470.535 kb on + strandat 1470.574 kb on - strandat 1470.579 kb on - strandat 1470.643 kb on + strand, within MMP_RS07770at 1470.643 kb on + strand, within MMP_RS07770at 1470.683 kb on - strand, within MMP_RS07770at 1470.853 kb on + strand, within MMP_RS07770at 1470.853 kb on + strand, within MMP_RS07770at 1470.895 kb on + strand, within MMP_RS07770at 1470.966 kb on - strand, within MMP_RS07770at 1470.967 kb on + strand, within MMP_RS07770at 1470.984 kb on - strand, within MMP_RS07770at 1470.989 kb on - strand, within MMP_RS07770at 1471.117 kb on - strand, within MMP_RS07770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
remove
1,468,156 + -3.3
1,468,242 - -2.7
1,468,802 - -4.3
1,468,829 + -0.8
1,468,829 + +0.6
1,468,845 + -0.7
1,468,924 + -0.0
1,468,965 - +1.7
1,469,132 + MMP_RS07765 0.14 +1.5
1,469,361 + MMP_RS07765 0.31 +1.6
1,469,364 - MMP_RS07765 0.31 +1.1
1,469,365 + MMP_RS07765 0.31 +0.7
1,469,566 + MMP_RS07765 0.46 +1.7
1,469,666 - MMP_RS07765 0.53 +2.0
1,469,684 - MMP_RS07765 0.55 +1.3
1,469,699 - MMP_RS07765 0.56 +1.6
1,469,740 + MMP_RS07765 0.59 +1.2
1,469,945 - MMP_RS07765 0.74 +2.3
1,470,037 - MMP_RS07765 0.81 +1.8
1,470,169 - -0.3
1,470,198 - +1.0
1,470,199 + +1.1
1,470,247 - +1.7
1,470,247 - +2.0
1,470,247 - +1.8
1,470,248 + +1.1
1,470,248 + +1.5
1,470,248 + +0.5
1,470,270 + +0.6
1,470,278 - +2.2
1,470,371 - +1.9
1,470,372 + +2.2
1,470,372 + +2.4
1,470,388 + +2.3
1,470,388 + +1.8
1,470,444 - -0.1
1,470,445 + +0.8
1,470,453 - -0.3
1,470,458 - +0.4
1,470,461 - -0.1
1,470,461 - +0.6
1,470,524 + +0.2
1,470,528 - +0.8
1,470,528 - +0.3
1,470,528 - -0.1
1,470,532 - +0.5
1,470,532 - -0.3
1,470,532 - +0.6
1,470,532 - -0.5
1,470,535 + +1.1
1,470,535 + -0.9
1,470,535 + +0.7
1,470,574 - +0.7
1,470,579 - -0.1
1,470,643 + MMP_RS07770 0.11 +1.2
1,470,643 + MMP_RS07770 0.11 +1.1
1,470,683 - MMP_RS07770 0.14 +1.6
1,470,853 + MMP_RS07770 0.30 +1.2
1,470,853 + MMP_RS07770 0.30 +0.1
1,470,895 + MMP_RS07770 0.33 -1.7
1,470,966 - MMP_RS07770 0.40 +0.5
1,470,967 + MMP_RS07770 0.40 +0.7
1,470,984 - MMP_RS07770 0.41 +0.1
1,470,989 - MMP_RS07770 0.42 +0.7
1,471,117 - MMP_RS07770 0.53 +0.3

Or see this region's nucleotide sequence