Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07350

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07345 and MMP_RS07350 are separated by 72 nucleotidesMMP_RS07350 and MMP_RS07355 are separated by 54 nucleotidesMMP_RS07355 and MMP_RS07360 are separated by 71 nucleotides MMP_RS07345: MMP_RS07345 - glycine synthesis protein GlyXL (from data), at 1,399,464 to 1,400,840 _RS07345 MMP_RS07350: MMP_RS07350 - preprotein translocase subunit Sec61beta, at 1,400,913 to 1,401,074 _RS07350 MMP_RS07355: MMP_RS07355 - transcription factor S, at 1,401,129 to 1,401,446 _RS07355 MMP_RS07360: MMP_RS07360 - TrkH family potassium uptake protein, at 1,401,518 to 1,402,954 _RS07360 Position (kb) 1400 1401 1402Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1399.959 kb on + strand, within MMP_RS07345at 1399.965 kb on - strand, within MMP_RS07345at 1399.995 kb on + strand, within MMP_RS07345at 1400.292 kb on + strand, within MMP_RS07345at 1400.337 kb on + strand, within MMP_RS07345at 1400.451 kb on + strand, within MMP_RS07345at 1400.465 kb on - strand, within MMP_RS07345at 1400.466 kb on + strand, within MMP_RS07345at 1400.673 kb on + strand, within MMP_RS07345at 1400.889 kb on + strandat 1400.890 kb on - strandat 1400.891 kb on + strandat 1400.965 kb on + strand, within MMP_RS07350at 1400.965 kb on + strand, within MMP_RS07350at 1400.989 kb on - strand, within MMP_RS07350at 1401.112 kb on + strandat 1401.127 kb on + strandat 1401.131 kb on + strandat 1401.131 kb on + strandat 1401.137 kb on + strandat 1401.150 kb on + strandat 1401.255 kb on - strand, within MMP_RS07355at 1401.417 kb on + strandat 1401.479 kb on + strandat 1401.481 kb on + strandat 1401.481 kb on + strandat 1401.512 kb on - strandat 1401.574 kb on + strandat 1401.796 kb on + strandat 1401.811 kb on - strandat 1402.015 kb on - strandat 1402.032 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,399,959 + MMP_RS07345 0.36 -4.9
1,399,965 - MMP_RS07345 0.36 -5.9
1,399,995 + MMP_RS07345 0.39 -3.3
1,400,292 + MMP_RS07345 0.60 -5.4
1,400,337 + MMP_RS07345 0.63 -4.6
1,400,451 + MMP_RS07345 0.72 -5.6
1,400,465 - MMP_RS07345 0.73 -4.7
1,400,466 + MMP_RS07345 0.73 -4.1
1,400,673 + MMP_RS07345 0.88 -5.4
1,400,889 + -0.1
1,400,890 - +0.6
1,400,891 + -1.5
1,400,965 + MMP_RS07350 0.32 +0.2
1,400,965 + MMP_RS07350 0.32 +0.8
1,400,989 - MMP_RS07350 0.47 +0.6
1,401,112 + +0.5
1,401,127 + -0.6
1,401,131 + +1.1
1,401,131 + +0.8
1,401,137 + +0.0
1,401,150 + -3.1
1,401,255 - MMP_RS07355 0.40 -2.0
1,401,417 + -2.8
1,401,479 + -2.1
1,401,481 + -3.7
1,401,481 + -1.0
1,401,512 - -2.1
1,401,574 + -5.6
1,401,796 + -0.6
1,401,811 - -0.9
1,402,015 - -1.1
1,402,032 + -1.2

Or see this region's nucleotide sequence