Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06590

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06575 and MMP_RS06580 are separated by 100 nucleotidesMMP_RS06580 and MMP_RS06585 are separated by 71 nucleotidesMMP_RS06585 and MMP_RS06590 are separated by 71 nucleotidesMMP_RS06590 and MMP_RS06595 are separated by 43 nucleotidesMMP_RS06595 and MMP_RS06600 are separated by 37 nucleotidesMMP_RS06600 and MMP_RS06605 are separated by 112 nucleotides MMP_RS06575: MMP_RS06575 - fluoride efflux transporter CrcB, at 1,263,122 to 1,263,490 _RS06575 MMP_RS06580: MMP_RS06580 - tRNA-Arg, at 1,263,591 to 1,263,665 _RS06580 MMP_RS06585: MMP_RS06585 - DMT family protein, at 1,263,737 to 1,264,075 _RS06585 MMP_RS06590: MMP_RS06590 - GNAT family N-acetyltransferase, at 1,264,147 to 1,264,653 _RS06590 MMP_RS06595: MMP_RS06595 - flagellar hook-basal body complex protein FliE, at 1,264,697 to 1,265,248 _RS06595 MMP_RS06600: MMP_RS06600 - class III signal peptide-containing protein, at 1,265,286 to 1,265,489 _RS06600 MMP_RS06605: MMP_RS06605 - DUF5814 domain-containing protein, at 1,265,602 to 1,268,037 _RS06605 Position (kb) 1264 1265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1263.216 kb on - strand, within MMP_RS06575at 1263.339 kb on - strand, within MMP_RS06575at 1263.380 kb on - strand, within MMP_RS06575at 1263.382 kb on - strand, within MMP_RS06575at 1263.382 kb on - strand, within MMP_RS06575at 1263.503 kb on - strandat 1263.542 kb on + strandat 1263.543 kb on - strandat 1263.545 kb on - strandat 1263.554 kb on + strandat 1263.739 kb on + strandat 1263.997 kb on + strand, within MMP_RS06585at 1264.065 kb on - strandat 1264.103 kb on + strandat 1264.105 kb on + strandat 1264.106 kb on - strandat 1264.121 kb on - strandat 1264.153 kb on + strandat 1264.155 kb on - strandat 1264.404 kb on - strand, within MMP_RS06590at 1264.417 kb on - strand, within MMP_RS06590at 1264.417 kb on - strand, within MMP_RS06590at 1264.591 kb on - strand, within MMP_RS06590at 1264.692 kb on + strandat 1264.703 kb on - strandat 1264.703 kb on - strandat 1265.287 kb on - strandat 1265.310 kb on - strand, within MMP_RS06600at 1265.311 kb on + strand, within MMP_RS06600at 1265.510 kb on - strandat 1265.511 kb on + strandat 1265.521 kb on - strandat 1265.526 kb on + strandat 1265.526 kb on + strandat 1265.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,263,216 - MMP_RS06575 0.25 +1.1
1,263,339 - MMP_RS06575 0.59 -0.5
1,263,380 - MMP_RS06575 0.70 +1.0
1,263,382 - MMP_RS06575 0.70 -0.3
1,263,382 - MMP_RS06575 0.70 -0.1
1,263,503 - +0.4
1,263,542 + +0.4
1,263,543 - -4.6
1,263,545 - -2.7
1,263,554 + -2.8
1,263,739 + +1.1
1,263,997 + MMP_RS06585 0.77 +0.3
1,264,065 - +0.8
1,264,103 + -0.4
1,264,105 + +0.1
1,264,106 - +0.2
1,264,121 - -0.0
1,264,153 + +0.3
1,264,155 - -1.2
1,264,404 - MMP_RS06590 0.51 +0.2
1,264,417 - MMP_RS06590 0.53 -0.4
1,264,417 - MMP_RS06590 0.53 +1.1
1,264,591 - MMP_RS06590 0.88 +0.5
1,264,692 + +0.2
1,264,703 - -1.1
1,264,703 - +1.1
1,265,287 - -1.5
1,265,310 - MMP_RS06600 0.12 +1.0
1,265,311 + MMP_RS06600 0.12 -1.4
1,265,510 - -0.7
1,265,511 + -1.7
1,265,521 - +0.5
1,265,526 + -3.1
1,265,526 + -0.1
1,265,544 - +0.2

Or see this region's nucleotide sequence