Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06490

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06480 and MMP_RS06485 are separated by 114 nucleotidesMMP_RS06485 and MMP_RS06490 overlap by 26 nucleotidesMMP_RS06490 and MMP_RS06495 are separated by 17 nucleotidesMMP_RS06495 and MMP_RS06500 are separated by 15 nucleotides MMP_RS06480: MMP_RS06480 - ABC transporter substrate-binding protein, at 1,243,648 to 1,244,796 _RS06480 MMP_RS06485: MMP_RS06485 - zinc ribbon domain-containing protein, at 1,244,911 to 1,245,483 _RS06485 MMP_RS06490: MMP_RS06490 - hypothetical protein, at 1,245,458 to 1,245,985 _RS06490 MMP_RS06495: MMP_RS06495 - YkgJ family cysteine cluster protein, at 1,246,003 to 1,246,815 _RS06495 MMP_RS06500: MMP_RS06500 - ATP-binding protein, at 1,246,831 to 1,248,324 _RS06500 Position (kb) 1245 1246Strain fitness (log2 ratio) -2 -1 0 1at 1244.758 kb on - strandat 1244.759 kb on + strandat 1244.828 kb on - strandat 1244.828 kb on - strandat 1244.835 kb on + strandat 1244.843 kb on - strandat 1245.286 kb on - strand, within MMP_RS06485at 1245.437 kb on + strandat 1245.440 kb on + strandat 1245.484 kb on - strandat 1245.536 kb on - strand, within MMP_RS06490at 1245.571 kb on + strand, within MMP_RS06490at 1245.819 kb on + strand, within MMP_RS06490at 1245.822 kb on + strand, within MMP_RS06490at 1245.822 kb on + strand, within MMP_RS06490at 1245.824 kb on + strand, within MMP_RS06490at 1245.920 kb on - strand, within MMP_RS06490at 1245.985 kb on - strandat 1245.985 kb on - strandat 1246.057 kb on + strandat 1246.087 kb on + strand, within MMP_RS06495at 1246.087 kb on + strand, within MMP_RS06495at 1246.138 kb on + strand, within MMP_RS06495at 1246.761 kb on + strandat 1246.782 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,244,758 - +1.0
1,244,759 + -0.0
1,244,828 - -2.0
1,244,828 - +0.0
1,244,835 + -0.2
1,244,843 - +0.6
1,245,286 - MMP_RS06485 0.65 -0.0
1,245,437 + +0.0
1,245,440 + -0.2
1,245,484 - +0.8
1,245,536 - MMP_RS06490 0.15 +0.6
1,245,571 + MMP_RS06490 0.21 +0.8
1,245,819 + MMP_RS06490 0.68 -1.1
1,245,822 + MMP_RS06490 0.69 +1.5
1,245,822 + MMP_RS06490 0.69 +1.0
1,245,824 + MMP_RS06490 0.69 -0.2
1,245,920 - MMP_RS06490 0.88 +0.8
1,245,985 - +1.5
1,245,985 - +0.9
1,246,057 + +0.9
1,246,087 + MMP_RS06495 0.10 -1.0
1,246,087 + MMP_RS06495 0.10 -0.1
1,246,138 + MMP_RS06495 0.17 +1.6
1,246,761 + +1.2
1,246,782 + +0.3

Or see this region's nucleotide sequence