Experiment: H2 N-free with 10mM L-Citrulline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06480 and MMP_RS06485 are separated by 114 nucleotides MMP_RS06485 and MMP_RS06490 overlap by 26 nucleotides MMP_RS06490 and MMP_RS06495 are separated by 17 nucleotides MMP_RS06495 and MMP_RS06500 are separated by 15 nucleotides
MMP_RS06480: MMP_RS06480 - ABC transporter substrate-binding protein, at 1,243,648 to 1,244,796
_RS06480
MMP_RS06485: MMP_RS06485 - zinc ribbon domain-containing protein, at 1,244,911 to 1,245,483
_RS06485
MMP_RS06490: MMP_RS06490 - hypothetical protein, at 1,245,458 to 1,245,985
_RS06490
MMP_RS06495: MMP_RS06495 - YkgJ family cysteine cluster protein, at 1,246,003 to 1,246,815
_RS06495
MMP_RS06500: MMP_RS06500 - ATP-binding protein, at 1,246,831 to 1,248,324
_RS06500
Position (kb)
1245
1246 Strain fitness (log2 ratio)
-2
-1
0
1 at 1244.758 kb on - strand at 1244.759 kb on + strand at 1244.828 kb on - strand at 1244.828 kb on - strand at 1244.835 kb on + strand at 1244.843 kb on - strand at 1245.286 kb on - strand, within MMP_RS06485 at 1245.437 kb on + strand at 1245.440 kb on + strand at 1245.484 kb on - strand at 1245.536 kb on - strand, within MMP_RS06490 at 1245.571 kb on + strand, within MMP_RS06490 at 1245.819 kb on + strand, within MMP_RS06490 at 1245.822 kb on + strand, within MMP_RS06490 at 1245.822 kb on + strand, within MMP_RS06490 at 1245.824 kb on + strand, within MMP_RS06490 at 1245.920 kb on - strand, within MMP_RS06490 at 1245.985 kb on - strand at 1245.985 kb on - strand at 1246.057 kb on + strand at 1246.087 kb on + strand, within MMP_RS06495 at 1246.087 kb on + strand, within MMP_RS06495 at 1246.138 kb on + strand, within MMP_RS06495 at 1246.761 kb on + strand at 1246.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline remove 1,244,758 - +1.0 1,244,759 + -0.0 1,244,828 - -2.0 1,244,828 - +0.0 1,244,835 + -0.2 1,244,843 - +0.6 1,245,286 - MMP_RS06485 0.65 -0.0 1,245,437 + +0.0 1,245,440 + -0.2 1,245,484 - +0.8 1,245,536 - MMP_RS06490 0.15 +0.6 1,245,571 + MMP_RS06490 0.21 +0.8 1,245,819 + MMP_RS06490 0.68 -1.1 1,245,822 + MMP_RS06490 0.69 +1.5 1,245,822 + MMP_RS06490 0.69 +1.0 1,245,824 + MMP_RS06490 0.69 -0.2 1,245,920 - MMP_RS06490 0.88 +0.8 1,245,985 - +1.5 1,245,985 - +0.9 1,246,057 + +0.9 1,246,087 + MMP_RS06495 0.10 -1.0 1,246,087 + MMP_RS06495 0.10 -0.1 1,246,138 + MMP_RS06495 0.17 +1.6 1,246,761 + +1.2 1,246,782 + +0.3
Or see this region's nucleotide sequence