Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06250

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06240 and MMP_RS06245 are separated by 38 nucleotidesMMP_RS06245 and MMP_RS06250 are separated by 41 nucleotidesMMP_RS06250 and MMP_RS06255 are separated by 98 nucleotides MMP_RS06240: MMP_RS06240 - thiolase domain-containing protein, at 1,199,123 to 1,200,301 _RS06240 MMP_RS06245: MMP_RS06245 - Zn-ribbon domain-containing OB-fold protein, at 1,200,340 to 1,200,732 _RS06245 MMP_RS06250: MMP_RS06250 - hypothetical protein, at 1,200,774 to 1,201,451 _RS06250 MMP_RS06255: MMP_RS06255 - cobyric acid synthase CobQ, at 1,201,550 to 1,203,028 _RS06255 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1199.888 kb on + strandat 1200.236 kb on + strandat 1200.312 kb on + strandat 1200.766 kb on + strandat 1200.776 kb on + strandat 1200.780 kb on + strandat 1200.826 kb on - strandat 1200.857 kb on + strand, within MMP_RS06250at 1200.917 kb on - strand, within MMP_RS06250at 1201.002 kb on - strand, within MMP_RS06250at 1201.150 kb on + strand, within MMP_RS06250at 1201.279 kb on + strand, within MMP_RS06250at 1201.329 kb on + strand, within MMP_RS06250at 1201.333 kb on - strand, within MMP_RS06250at 1201.333 kb on - strand, within MMP_RS06250at 1201.334 kb on + strand, within MMP_RS06250at 1201.340 kb on - strand, within MMP_RS06250at 1201.415 kb on + strandat 1201.418 kb on + strandat 1201.477 kb on - strandat 1201.478 kb on + strandat 1201.514 kb on - strandat 1201.546 kb on - strandat 1201.546 kb on - strandat 1201.559 kb on + strandat 1201.589 kb on - strandat 1201.632 kb on - strandat 1201.683 kb on + strandat 1201.895 kb on - strandat 1202.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,199,888 + -1.5
1,200,236 + +1.6
1,200,312 + -0.4
1,200,766 + -0.2
1,200,776 + -1.0
1,200,780 + +0.1
1,200,826 - +0.5
1,200,857 + MMP_RS06250 0.12 +0.0
1,200,917 - MMP_RS06250 0.21 -0.0
1,201,002 - MMP_RS06250 0.34 +0.1
1,201,150 + MMP_RS06250 0.55 -0.7
1,201,279 + MMP_RS06250 0.74 +0.3
1,201,329 + MMP_RS06250 0.82 +0.8
1,201,333 - MMP_RS06250 0.82 +0.8
1,201,333 - MMP_RS06250 0.82 +0.8
1,201,334 + MMP_RS06250 0.83 +0.6
1,201,340 - MMP_RS06250 0.83 +1.9
1,201,415 + -1.2
1,201,418 + +0.2
1,201,477 - +0.0
1,201,478 + +1.0
1,201,514 - -0.2
1,201,546 - -1.4
1,201,546 - +1.3
1,201,559 + +1.1
1,201,589 - +1.1
1,201,632 - -1.5
1,201,683 + -2.5
1,201,895 - -1.8
1,202,383 - -4.6

Or see this region's nucleotide sequence