Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06050

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06040 and MMP_RS06045 are separated by 29 nucleotidesMMP_RS06045 and MMP_RS06050 are separated by 122 nucleotidesMMP_RS06050 and MMP_RS06055 are separated by 219 nucleotides MMP_RS06040: MMP_RS06040 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 1,154,613 to 1,155,227 _RS06040 MMP_RS06045: MMP_RS06045 - DNA polymerase, at 1,155,257 to 1,155,808 _RS06045 MMP_RS06050: MMP_RS06050 - ZIP family metal transporter, at 1,155,931 to 1,156,740 _RS06050 MMP_RS06055: MMP_RS06055 - peroxiredoxin, at 1,156,960 to 1,157,613 _RS06055 Position (kb) 1155 1156 1157Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1155.033 kb on - strandat 1155.034 kb on + strandat 1155.077 kb on + strandat 1155.077 kb on + strandat 1155.086 kb on - strandat 1155.086 kb on - strandat 1155.197 kb on + strandat 1155.197 kb on + strandat 1155.209 kb on + strandat 1155.209 kb on + strandat 1155.209 kb on + strandat 1155.243 kb on + strandat 1155.249 kb on - strandat 1155.250 kb on + strandat 1155.250 kb on + strandat 1155.250 kb on + strandat 1155.253 kb on - strandat 1155.372 kb on + strand, within MMP_RS06045at 1155.375 kb on + strand, within MMP_RS06045at 1155.420 kb on + strand, within MMP_RS06045at 1155.483 kb on + strand, within MMP_RS06045at 1155.488 kb on + strand, within MMP_RS06045at 1155.538 kb on - strand, within MMP_RS06045at 1155.620 kb on + strand, within MMP_RS06045at 1155.620 kb on + strand, within MMP_RS06045at 1155.682 kb on - strand, within MMP_RS06045at 1155.689 kb on - strand, within MMP_RS06045at 1155.700 kb on + strand, within MMP_RS06045at 1155.700 kb on + strand, within MMP_RS06045at 1155.703 kb on + strand, within MMP_RS06045at 1155.713 kb on + strand, within MMP_RS06045at 1155.713 kb on + strand, within MMP_RS06045at 1155.767 kb on + strandat 1155.798 kb on + strandat 1155.825 kb on - strandat 1155.961 kb on - strandat 1155.997 kb on + strandat 1156.001 kb on + strandat 1156.001 kb on + strandat 1156.001 kb on + strandat 1156.001 kb on + strandat 1156.042 kb on - strand, within MMP_RS06050at 1156.043 kb on + strand, within MMP_RS06050at 1156.075 kb on + strand, within MMP_RS06050at 1156.137 kb on - strand, within MMP_RS06050at 1156.347 kb on - strand, within MMP_RS06050at 1156.348 kb on + strand, within MMP_RS06050at 1156.350 kb on - strand, within MMP_RS06050at 1156.421 kb on + strand, within MMP_RS06050at 1156.455 kb on - strand, within MMP_RS06050at 1156.651 kb on - strand, within MMP_RS06050at 1156.652 kb on + strand, within MMP_RS06050at 1156.781 kb on - strandat 1156.815 kb on - strandat 1156.816 kb on + strandat 1156.820 kb on + strandat 1156.820 kb on + strandat 1156.902 kb on - strandat 1156.902 kb on - strandat 1156.903 kb on + strandat 1156.904 kb on - strandat 1156.904 kb on - strandat 1156.905 kb on + strandat 1156.905 kb on + strandat 1156.905 kb on + strandat 1156.905 kb on + strandat 1156.906 kb on - strandat 1156.906 kb on - strandat 1156.927 kb on - strandat 1156.929 kb on - strandat 1156.930 kb on + strandat 1156.934 kb on + strandat 1156.934 kb on + strandat 1156.964 kb on - strandat 1157.035 kb on - strand, within MMP_RS06055at 1157.035 kb on - strand, within MMP_RS06055at 1157.038 kb on + strand, within MMP_RS06055at 1157.064 kb on + strand, within MMP_RS06055at 1157.213 kb on - strand, within MMP_RS06055at 1157.238 kb on + strand, within MMP_RS06055at 1157.337 kb on + strand, within MMP_RS06055at 1157.397 kb on - strand, within MMP_RS06055at 1157.603 kb on - strandat 1157.702 kb on - strandat 1157.703 kb on + strandat 1157.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,155,033 - -1.1
1,155,034 + -0.4
1,155,077 + -0.9
1,155,077 + -0.6
1,155,086 - -2.5
1,155,086 - -2.8
1,155,197 + -0.1
1,155,197 + -0.2
1,155,209 + +0.1
1,155,209 + +0.6
1,155,209 + -0.9
1,155,243 + +0.3
1,155,249 - +0.5
1,155,250 + +0.9
1,155,250 + +0.2
1,155,250 + -0.0
1,155,253 - +1.2
1,155,372 + MMP_RS06045 0.21 +1.3
1,155,375 + MMP_RS06045 0.21 -0.0
1,155,420 + MMP_RS06045 0.30 +0.0
1,155,483 + MMP_RS06045 0.41 +0.6
1,155,488 + MMP_RS06045 0.42 +1.7
1,155,538 - MMP_RS06045 0.51 +0.4
1,155,620 + MMP_RS06045 0.66 +0.8
1,155,620 + MMP_RS06045 0.66 +0.0
1,155,682 - MMP_RS06045 0.77 +0.3
1,155,689 - MMP_RS06045 0.78 +0.1
1,155,700 + MMP_RS06045 0.80 -0.3
1,155,700 + MMP_RS06045 0.80 -0.1
1,155,703 + MMP_RS06045 0.81 -0.3
1,155,713 + MMP_RS06045 0.83 +0.9
1,155,713 + MMP_RS06045 0.83 -0.2
1,155,767 + +0.8
1,155,798 + +0.3
1,155,825 - +0.0
1,155,961 - -0.1
1,155,997 + +0.6
1,156,001 + +1.1
1,156,001 + -0.4
1,156,001 + +1.7
1,156,001 + +1.0
1,156,042 - MMP_RS06050 0.14 +0.4
1,156,043 + MMP_RS06050 0.14 +1.6
1,156,075 + MMP_RS06050 0.18 -0.0
1,156,137 - MMP_RS06050 0.25 -0.2
1,156,347 - MMP_RS06050 0.51 +0.6
1,156,348 + MMP_RS06050 0.51 -0.7
1,156,350 - MMP_RS06050 0.52 +1.4
1,156,421 + MMP_RS06050 0.60 +0.7
1,156,455 - MMP_RS06050 0.65 -0.5
1,156,651 - MMP_RS06050 0.89 +1.0
1,156,652 + MMP_RS06050 0.89 +0.2
1,156,781 - +0.5
1,156,815 - +1.5
1,156,816 + +0.9
1,156,820 + -0.4
1,156,820 + +2.2
1,156,902 - +0.6
1,156,902 - +0.3
1,156,903 + +0.3
1,156,904 - -0.7
1,156,904 - -0.3
1,156,905 + +0.4
1,156,905 + -0.2
1,156,905 + -1.2
1,156,905 + -1.2
1,156,906 - +0.2
1,156,906 - +0.2
1,156,927 - -0.0
1,156,929 - +0.6
1,156,930 + +0.8
1,156,934 + +0.4
1,156,934 + +0.1
1,156,964 - -0.1
1,157,035 - MMP_RS06055 0.11 -1.9
1,157,035 - MMP_RS06055 0.11 -0.7
1,157,038 + MMP_RS06055 0.12 -0.5
1,157,064 + MMP_RS06055 0.16 +0.3
1,157,213 - MMP_RS06055 0.39 +1.2
1,157,238 + MMP_RS06055 0.43 +0.5
1,157,337 + MMP_RS06055 0.58 +0.3
1,157,397 - MMP_RS06055 0.67 +0.1
1,157,603 - -0.9
1,157,702 - +0.1
1,157,703 + -0.5
1,157,706 - +0.9

Or see this region's nucleotide sequence