Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05715

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05710 and MMP_RS05715 are separated by 12 nucleotidesMMP_RS05715 and MMP_RS05720 are separated by 0 nucleotidesMMP_RS05720 and MMP_RS05725 are separated by 13 nucleotides MMP_RS05710: MMP_RS05710 - ADP-forming succinate--CoA ligase subunit beta, at 1,096,371 to 1,097,459 _RS05710 MMP_RS05715: MMP_RS05715 - hypothetical protein, at 1,097,472 to 1,097,783 _RS05715 MMP_RS05720: MMP_RS05720 - signal recognition particle subunit SRP19/SEC65 family protein, at 1,097,784 to 1,098,053 _RS05720 MMP_RS05725: MMP_RS05725 - magnesium/cobalt transporter CorA, at 1,098,067 to 1,099,017 _RS05725 Position (kb) 1097 1098Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1096.483 kb on - strandat 1096.653 kb on - strandat 1096.736 kb on + strandat 1096.801 kb on + strandat 1096.995 kb on - strandat 1097.330 kb on - strandat 1097.453 kb on - strandat 1097.529 kb on + strand, within MMP_RS05715at 1097.541 kb on - strand, within MMP_RS05715at 1097.542 kb on + strand, within MMP_RS05715at 1097.544 kb on + strand, within MMP_RS05715at 1097.562 kb on - strand, within MMP_RS05715at 1097.562 kb on - strand, within MMP_RS05715at 1097.563 kb on + strand, within MMP_RS05715at 1097.563 kb on + strand, within MMP_RS05715at 1097.584 kb on + strand, within MMP_RS05715at 1097.603 kb on + strand, within MMP_RS05715at 1097.653 kb on + strand, within MMP_RS05715at 1097.799 kb on + strandat 1097.799 kb on + strandat 1097.802 kb on - strandat 1097.802 kb on - strandat 1097.802 kb on - strandat 1097.802 kb on - strandat 1097.855 kb on - strand, within MMP_RS05720at 1097.910 kb on + strand, within MMP_RS05720at 1097.912 kb on + strand, within MMP_RS05720at 1098.024 kb on + strand, within MMP_RS05720at 1098.106 kb on - strandat 1098.176 kb on - strandat 1098.195 kb on + strandat 1098.343 kb on - strandat 1098.441 kb on - strandat 1098.450 kb on - strandat 1098.490 kb on - strandat 1098.534 kb on - strandat 1098.589 kb on - strandat 1098.594 kb on - strandat 1098.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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1,096,483 - -2.8
1,096,653 - -3.2
1,096,736 + -2.8
1,096,801 + -2.1
1,096,995 - -1.2
1,097,330 - -2.8
1,097,453 - +0.1
1,097,529 + MMP_RS05715 0.18 -1.1
1,097,541 - MMP_RS05715 0.22 +1.1
1,097,542 + MMP_RS05715 0.22 -0.7
1,097,544 + MMP_RS05715 0.23 +0.4
1,097,562 - MMP_RS05715 0.29 +1.5
1,097,562 - MMP_RS05715 0.29 +2.1
1,097,563 + MMP_RS05715 0.29 +0.4
1,097,563 + MMP_RS05715 0.29 +0.7
1,097,584 + MMP_RS05715 0.36 -1.1
1,097,603 + MMP_RS05715 0.42 +0.3
1,097,653 + MMP_RS05715 0.58 +1.2
1,097,799 + -0.3
1,097,799 + +0.2
1,097,802 - +0.1
1,097,802 - +0.8
1,097,802 - +0.1
1,097,802 - -0.4
1,097,855 - MMP_RS05720 0.26 +0.5
1,097,910 + MMP_RS05720 0.47 +2.0
1,097,912 + MMP_RS05720 0.47 +0.2
1,098,024 + MMP_RS05720 0.89 +0.2
1,098,106 - -1.7
1,098,176 - -2.4
1,098,195 + -3.3
1,098,343 - -4.4
1,098,441 - -4.7
1,098,450 - -3.7
1,098,490 - -4.0
1,098,534 - -2.0
1,098,589 - -4.4
1,098,594 - -4.6
1,098,616 - -4.9

Or see this region's nucleotide sequence