Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05085

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05080 and MMP_RS05085 are separated by 14 nucleotidesMMP_RS05085 and MMP_RS05090 are separated by 10 nucleotides MMP_RS05080: MMP_RS05080 - acetyl-CoA decarbonylase/synthase complex subunit delta, at 966,196 to 967,350 _RS05080 MMP_RS05085: MMP_RS05085 - AAA family ATPase, at 967,365 to 968,117 _RS05085 MMP_RS05090: MMP_RS05090 - CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta, at 968,128 to 969,501 _RS05090 Position (kb) 967 968 969Strain fitness (log2 ratio) -1 0 1 2at 966.505 kb on - strand, within MMP_RS05080at 966.559 kb on - strand, within MMP_RS05080at 966.559 kb on - strand, within MMP_RS05080at 966.560 kb on + strand, within MMP_RS05080at 966.578 kb on + strand, within MMP_RS05080at 966.591 kb on - strand, within MMP_RS05080at 966.622 kb on - strand, within MMP_RS05080at 966.623 kb on + strand, within MMP_RS05080at 966.623 kb on + strand, within MMP_RS05080at 966.864 kb on - strand, within MMP_RS05080at 966.910 kb on + strand, within MMP_RS05080at 966.964 kb on - strand, within MMP_RS05080at 966.964 kb on - strand, within MMP_RS05080at 966.965 kb on + strand, within MMP_RS05080at 966.965 kb on + strand, within MMP_RS05080at 967.021 kb on - strand, within MMP_RS05080at 967.022 kb on + strand, within MMP_RS05080at 967.467 kb on + strand, within MMP_RS05085at 967.483 kb on + strand, within MMP_RS05085at 967.570 kb on - strand, within MMP_RS05085at 967.732 kb on + strand, within MMP_RS05085at 967.741 kb on - strand, within MMP_RS05085at 967.742 kb on + strand, within MMP_RS05085at 967.781 kb on - strand, within MMP_RS05085at 967.795 kb on - strand, within MMP_RS05085at 967.853 kb on - strand, within MMP_RS05085at 967.871 kb on - strand, within MMP_RS05085at 967.892 kb on - strand, within MMP_RS05085at 967.910 kb on - strand, within MMP_RS05085at 967.911 kb on + strand, within MMP_RS05085at 968.129 kb on - strandat 968.130 kb on + strandat 968.297 kb on + strand, within MMP_RS05090at 968.482 kb on - strand, within MMP_RS05090at 968.710 kb on - strand, within MMP_RS05090at 968.901 kb on - strand, within MMP_RS05090at 968.950 kb on - strand, within MMP_RS05090at 968.951 kb on + strand, within MMP_RS05090at 968.986 kb on + strand, within MMP_RS05090at 969.055 kb on - strand, within MMP_RS05090at 969.055 kb on - strand, within MMP_RS05090at 969.056 kb on + strand, within MMP_RS05090

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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966,505 - MMP_RS05080 0.27 -0.4
966,559 - MMP_RS05080 0.31 -0.1
966,559 - MMP_RS05080 0.31 -0.7
966,560 + MMP_RS05080 0.32 -0.1
966,578 + MMP_RS05080 0.33 +0.5
966,591 - MMP_RS05080 0.34 +0.8
966,622 - MMP_RS05080 0.37 +0.5
966,623 + MMP_RS05080 0.37 +0.2
966,623 + MMP_RS05080 0.37 -0.1
966,864 - MMP_RS05080 0.58 +1.2
966,910 + MMP_RS05080 0.62 +0.3
966,964 - MMP_RS05080 0.66 +0.7
966,964 - MMP_RS05080 0.66 -0.1
966,965 + MMP_RS05080 0.67 +1.2
966,965 + MMP_RS05080 0.67 +1.8
967,021 - MMP_RS05080 0.71 +0.3
967,022 + MMP_RS05080 0.72 +0.3
967,467 + MMP_RS05085 0.14 +1.9
967,483 + MMP_RS05085 0.16 +0.7
967,570 - MMP_RS05085 0.27 +0.8
967,732 + MMP_RS05085 0.49 -1.1
967,741 - MMP_RS05085 0.50 +2.5
967,742 + MMP_RS05085 0.50 +0.5
967,781 - MMP_RS05085 0.55 +0.1
967,795 - MMP_RS05085 0.57 +0.5
967,853 - MMP_RS05085 0.65 +0.6
967,871 - MMP_RS05085 0.67 +1.1
967,892 - MMP_RS05085 0.70 +0.0
967,910 - MMP_RS05085 0.72 -0.7
967,911 + MMP_RS05085 0.73 +0.8
968,129 - -1.1
968,130 + +0.3
968,297 + MMP_RS05090 0.12 +0.3
968,482 - MMP_RS05090 0.26 -0.1
968,710 - MMP_RS05090 0.42 +1.4
968,901 - MMP_RS05090 0.56 -0.8
968,950 - MMP_RS05090 0.60 +1.2
968,951 + MMP_RS05090 0.60 +0.1
968,986 + MMP_RS05090 0.62 -0.3
969,055 - MMP_RS05090 0.67 +1.2
969,055 - MMP_RS05090 0.67 +0.9
969,056 + MMP_RS05090 0.68 +0.9

Or see this region's nucleotide sequence