Experiment: H2 N-free with 10mM L-Citrulline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03570 and MMP_RS03575 are separated by 164 nucleotides MMP_RS03575 and MMP_RS03580 are separated by 99 nucleotides
MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366
_RS03570
MMP_RS03575: MMP_RS03575 - ECF transporter S component, at 670,531 to 671,097
_RS03575
MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348
_RS03580
Position (kb) 670
671
672 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 669.687 kb on + strand, within MMP_RS03570 at 669.798 kb on + strand, within MMP_RS03570 at 669.825 kb on + strand, within MMP_RS03570 at 669.867 kb on + strand, within MMP_RS03570 at 669.883 kb on - strand, within MMP_RS03570 at 669.884 kb on + strand, within MMP_RS03570 at 669.906 kb on + strand, within MMP_RS03570 at 669.914 kb on - strand, within MMP_RS03570 at 669.931 kb on - strand, within MMP_RS03570 at 669.945 kb on - strand, within MMP_RS03570 at 670.069 kb on - strand, within MMP_RS03570 at 670.334 kb on - strand at 670.335 kb on + strand at 670.350 kb on + strand at 670.350 kb on + strand at 670.350 kb on + strand at 670.356 kb on + strand at 670.392 kb on + strand at 670.437 kb on + strand at 670.440 kb on - strand at 670.466 kb on - strand at 670.536 kb on - strand at 670.558 kb on - strand at 670.559 kb on + strand at 670.583 kb on + strand at 670.598 kb on - strand, within MMP_RS03575 at 670.616 kb on + strand, within MMP_RS03575 at 670.655 kb on - strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.671 kb on - strand, within MMP_RS03575 at 670.683 kb on - strand, within MMP_RS03575 at 670.778 kb on + strand, within MMP_RS03575 at 670.805 kb on + strand, within MMP_RS03575 at 670.874 kb on + strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.981 kb on - strand, within MMP_RS03575 at 671.057 kb on + strand at 671.088 kb on - strand at 671.089 kb on + strand at 671.143 kb on + strand at 671.143 kb on + strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.152 kb on + strand at 671.185 kb on - strand at 671.312 kb on + strand at 671.410 kb on + strand, within MMP_RS03580 at 671.521 kb on - strand, within MMP_RS03580 at 671.606 kb on - strand, within MMP_RS03580 at 671.754 kb on - strand, within MMP_RS03580 at 671.960 kb on + strand, within MMP_RS03580 at 672.061 kb on + strand, within MMP_RS03580
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline remove 669,687 + MMP_RS03570 0.45 -1.6 669,798 + MMP_RS03570 0.54 -1.1 669,825 + MMP_RS03570 0.56 -0.5 669,867 + MMP_RS03570 0.60 +0.4 669,883 - MMP_RS03570 0.61 +0.9 669,884 + MMP_RS03570 0.61 -0.5 669,906 + MMP_RS03570 0.63 -0.5 669,914 - MMP_RS03570 0.64 +0.1 669,931 - MMP_RS03570 0.65 -0.0 669,945 - MMP_RS03570 0.66 +1.1 670,069 - MMP_RS03570 0.76 -1.6 670,334 - +1.6 670,335 + -0.5 670,350 + -0.3 670,350 + -0.0 670,350 + -0.1 670,356 + +0.7 670,392 + -0.5 670,437 + +0.2 670,440 - -0.3 670,466 - +0.0 670,536 - -0.1 670,558 - +0.1 670,559 + -0.1 670,583 + -0.5 670,598 - MMP_RS03575 0.12 +1.3 670,616 + MMP_RS03575 0.15 +0.5 670,655 - MMP_RS03575 0.22 -0.5 670,656 + MMP_RS03575 0.22 +0.6 670,656 + MMP_RS03575 0.22 -1.1 670,656 + MMP_RS03575 0.22 +0.9 670,671 - MMP_RS03575 0.25 +0.6 670,683 - MMP_RS03575 0.27 +0.1 670,778 + MMP_RS03575 0.44 +1.1 670,805 + MMP_RS03575 0.48 +0.1 670,874 + MMP_RS03575 0.60 +0.2 670,908 - MMP_RS03575 0.66 +1.0 670,908 - MMP_RS03575 0.66 +0.8 670,908 - MMP_RS03575 0.66 +0.4 670,981 - MMP_RS03575 0.79 +0.2 671,057 + +1.0 671,088 - +0.1 671,089 + +1.1 671,143 + +0.5 671,143 + -0.6 671,144 - -1.2 671,144 - -0.7 671,152 + +0.0 671,185 - -0.4 671,312 + -1.0 671,410 + MMP_RS03580 0.18 -4.7 671,521 - MMP_RS03580 0.28 -2.9 671,606 - MMP_RS03580 0.36 -3.0 671,754 - MMP_RS03580 0.48 -1.6 671,960 + MMP_RS03580 0.66 -4.0 672,061 + MMP_RS03580 0.75 -1.2
Or see this region's nucleotide sequence