Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02045

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02040 and MMP_RS02045 are separated by 213 nucleotidesMMP_RS02045 and MMP_RS02050 are separated by 86 nucleotidesMMP_RS02050 and MMP_RS02055 are separated by 114 nucleotidesMMP_RS02055 and MMP_RS02060 are separated by 105 nucleotides MMP_RS02040: MMP_RS02040 - S-layer protein, at 381,781 to 383,508 _RS02040 MMP_RS02045: MMP_RS02045 - tRNA-Met, at 383,722 to 383,800 _RS02045 MMP_RS02050: MMP_RS02050 - tRNA-Met, at 383,887 to 383,965 _RS02050 MMP_RS02055: MMP_RS02055 - DUF2116 family Zn-ribbon domain-containing protein, at 384,080 to 384,262 _RS02055 MMP_RS02060: MMP_RS02060 - UMP kinase, at 384,368 to 385,045 _RS02060 Position (kb) 383 384Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 383.511 kb on + strandat 383.622 kb on - strandat 383.623 kb on + strandat 383.690 kb on - strandat 383.695 kb on + strandat 383.707 kb on - strandat 383.792 kb on - strand, within MMP_RS02045at 383.822 kb on - strandat 384.007 kb on - strandat 384.096 kb on - strandat 384.097 kb on + strandat 384.097 kb on + strandat 384.306 kb on - strandat 384.307 kb on + strandat 384.310 kb on - strandat 384.354 kb on + strandat 384.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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383,511 + +0.1
383,622 - +0.1
383,623 + +0.3
383,690 - -1.9
383,695 + -2.2
383,707 - -1.0
383,792 - MMP_RS02045 0.89 +1.4
383,822 - +0.7
384,007 - -3.8
384,096 - +0.2
384,097 + +1.0
384,097 + +1.1
384,306 - -0.7
384,307 + -0.9
384,310 - +0.3
384,354 + +0.6
384,740 + +0.6

Or see this region's nucleotide sequence