Experiment: H2 N-free with 10mM L-Citrulline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01640 and MMP_RS01645 are separated by 72 nucleotides MMP_RS01645 and MMP_RS01650 are separated by 156 nucleotides MMP_RS01650 and MMP_RS01655 are separated by 9 nucleotides MMP_RS01655 and MMP_RS01660 are separated by 124 nucleotides
MMP_RS01640: MMP_RS01640 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 303,341 to 305,053
_RS01640
MMP_RS01645: MMP_RS01645 - SWIM zinc finger family protein, at 305,126 to 305,815
_RS01645
MMP_RS01650: MMP_RS01650 - sulfurtransferase TusA family protein, at 305,972 to 306,184
_RS01650
MMP_RS01655: MMP_RS01655 - DsrE family protein, at 306,194 to 306,538
_RS01655
MMP_RS01660: MMP_RS01660 - hypothetical protein, at 306,663 to 307,247
_RS01660
Position (kb)
305
306 Strain fitness (log2 ratio)
-2
-1
0
1 at 304.160 kb on - strand, within MMP_RS01640 at 304.163 kb on - strand, within MMP_RS01640 at 304.284 kb on + strand, within MMP_RS01640 at 304.284 kb on + strand, within MMP_RS01640 at 304.313 kb on - strand, within MMP_RS01640 at 304.493 kb on - strand, within MMP_RS01640 at 304.773 kb on + strand, within MMP_RS01640 at 304.880 kb on - strand, within MMP_RS01640 at 304.943 kb on - strand at 304.943 kb on - strand at 304.975 kb on - strand at 305.071 kb on - strand at 305.078 kb on + strand at 305.096 kb on + strand at 305.097 kb on - strand at 305.097 kb on - strand at 305.097 kb on - strand at 305.098 kb on + strand at 305.139 kb on - strand at 305.139 kb on - strand at 305.139 kb on - strand at 305.139 kb on - strand at 305.140 kb on + strand at 305.140 kb on + strand at 305.140 kb on + strand at 305.140 kb on + strand at 305.141 kb on - strand at 305.142 kb on + strand at 305.142 kb on + strand at 305.142 kb on + strand at 305.380 kb on + strand, within MMP_RS01645 at 305.542 kb on + strand, within MMP_RS01645 at 305.625 kb on - strand, within MMP_RS01645 at 305.630 kb on - strand, within MMP_RS01645 at 305.773 kb on - strand at 305.792 kb on - strand at 305.792 kb on - strand at 305.884 kb on + strand at 306.118 kb on - strand, within MMP_RS01650 at 306.169 kb on + strand at 306.174 kb on - strand at 306.210 kb on - strand at 306.323 kb on - strand, within MMP_RS01655 at 306.365 kb on - strand, within MMP_RS01655 at 306.499 kb on + strand, within MMP_RS01655 at 306.521 kb on + strand at 306.545 kb on - strand at 306.558 kb on - strand at 306.590 kb on + strand at 306.603 kb on - strand at 306.617 kb on - strand at 306.622 kb on - strand at 306.636 kb on - strand at 306.636 kb on - strand at 306.641 kb on - strand at 306.647 kb on + strand at 306.663 kb on + strand at 306.663 kb on + strand at 306.744 kb on - strand, within MMP_RS01660 at 306.745 kb on + strand, within MMP_RS01660 at 306.756 kb on + strand, within MMP_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline remove 304,160 - MMP_RS01640 0.48 +0.6 304,163 - MMP_RS01640 0.48 +0.9 304,284 + MMP_RS01640 0.55 +0.7 304,284 + MMP_RS01640 0.55 +1.2 304,313 - MMP_RS01640 0.57 -0.4 304,493 - MMP_RS01640 0.67 -0.5 304,773 + MMP_RS01640 0.84 +0.4 304,880 - MMP_RS01640 0.90 +0.8 304,943 - -1.4 304,943 - +0.5 304,975 - +0.6 305,071 - +0.1 305,078 + +0.3 305,096 + +0.9 305,097 - -0.4 305,097 - -1.6 305,097 - +0.9 305,098 + +0.1 305,139 - +0.8 305,139 - -0.5 305,139 - +0.4 305,139 - -0.8 305,140 + +0.6 305,140 + -0.6 305,140 + +0.1 305,140 + +0.6 305,141 - -0.6 305,142 + +0.6 305,142 + -0.6 305,142 + -2.2 305,380 + MMP_RS01645 0.37 +0.8 305,542 + MMP_RS01645 0.60 -0.2 305,625 - MMP_RS01645 0.72 +0.1 305,630 - MMP_RS01645 0.73 +1.3 305,773 - -1.0 305,792 - +1.1 305,792 - +0.6 305,884 + +0.1 306,118 - MMP_RS01650 0.69 -0.1 306,169 + -0.4 306,174 - +0.5 306,210 - +1.3 306,323 - MMP_RS01655 0.37 +0.4 306,365 - MMP_RS01655 0.50 -1.6 306,499 + MMP_RS01655 0.88 +0.8 306,521 + +1.7 306,545 - +0.7 306,558 - +0.3 306,590 + +0.8 306,603 - +0.9 306,617 - +0.9 306,622 - +0.8 306,636 - +0.6 306,636 - -1.0 306,641 - +0.6 306,647 + -1.0 306,663 + -1.2 306,663 + +0.5 306,744 - MMP_RS01660 0.14 +1.5 306,745 + MMP_RS01660 0.14 -0.3 306,756 + MMP_RS01660 0.16 -0.6
Or see this region's nucleotide sequence