Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01645

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01640 and MMP_RS01645 are separated by 72 nucleotidesMMP_RS01645 and MMP_RS01650 are separated by 156 nucleotidesMMP_RS01650 and MMP_RS01655 are separated by 9 nucleotidesMMP_RS01655 and MMP_RS01660 are separated by 124 nucleotides MMP_RS01640: MMP_RS01640 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 303,341 to 305,053 _RS01640 MMP_RS01645: MMP_RS01645 - SWIM zinc finger family protein, at 305,126 to 305,815 _RS01645 MMP_RS01650: MMP_RS01650 - sulfurtransferase TusA family protein, at 305,972 to 306,184 _RS01650 MMP_RS01655: MMP_RS01655 - DsrE family protein, at 306,194 to 306,538 _RS01655 MMP_RS01660: MMP_RS01660 - hypothetical protein, at 306,663 to 307,247 _RS01660 Position (kb) 305 306Strain fitness (log2 ratio) -2 -1 0 1at 304.160 kb on - strand, within MMP_RS01640at 304.163 kb on - strand, within MMP_RS01640at 304.284 kb on + strand, within MMP_RS01640at 304.284 kb on + strand, within MMP_RS01640at 304.313 kb on - strand, within MMP_RS01640at 304.493 kb on - strand, within MMP_RS01640at 304.773 kb on + strand, within MMP_RS01640at 304.880 kb on - strand, within MMP_RS01640at 304.943 kb on - strandat 304.943 kb on - strandat 304.975 kb on - strandat 305.071 kb on - strandat 305.078 kb on + strandat 305.096 kb on + strandat 305.097 kb on - strandat 305.097 kb on - strandat 305.097 kb on - strandat 305.098 kb on + strandat 305.139 kb on - strandat 305.139 kb on - strandat 305.139 kb on - strandat 305.139 kb on - strandat 305.140 kb on + strandat 305.140 kb on + strandat 305.140 kb on + strandat 305.140 kb on + strandat 305.141 kb on - strandat 305.142 kb on + strandat 305.142 kb on + strandat 305.142 kb on + strandat 305.380 kb on + strand, within MMP_RS01645at 305.542 kb on + strand, within MMP_RS01645at 305.625 kb on - strand, within MMP_RS01645at 305.630 kb on - strand, within MMP_RS01645at 305.773 kb on - strandat 305.792 kb on - strandat 305.792 kb on - strandat 305.884 kb on + strandat 306.118 kb on - strand, within MMP_RS01650at 306.169 kb on + strandat 306.174 kb on - strandat 306.210 kb on - strandat 306.323 kb on - strand, within MMP_RS01655at 306.365 kb on - strand, within MMP_RS01655at 306.499 kb on + strand, within MMP_RS01655at 306.521 kb on + strandat 306.545 kb on - strandat 306.558 kb on - strandat 306.590 kb on + strandat 306.603 kb on - strandat 306.617 kb on - strandat 306.622 kb on - strandat 306.636 kb on - strandat 306.636 kb on - strandat 306.641 kb on - strandat 306.647 kb on + strandat 306.663 kb on + strandat 306.663 kb on + strandat 306.744 kb on - strand, within MMP_RS01660at 306.745 kb on + strand, within MMP_RS01660at 306.756 kb on + strand, within MMP_RS01660

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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304,160 - MMP_RS01640 0.48 +0.6
304,163 - MMP_RS01640 0.48 +0.9
304,284 + MMP_RS01640 0.55 +0.7
304,284 + MMP_RS01640 0.55 +1.2
304,313 - MMP_RS01640 0.57 -0.4
304,493 - MMP_RS01640 0.67 -0.5
304,773 + MMP_RS01640 0.84 +0.4
304,880 - MMP_RS01640 0.90 +0.8
304,943 - -1.4
304,943 - +0.5
304,975 - +0.6
305,071 - +0.1
305,078 + +0.3
305,096 + +0.9
305,097 - -0.4
305,097 - -1.6
305,097 - +0.9
305,098 + +0.1
305,139 - +0.8
305,139 - -0.5
305,139 - +0.4
305,139 - -0.8
305,140 + +0.6
305,140 + -0.6
305,140 + +0.1
305,140 + +0.6
305,141 - -0.6
305,142 + +0.6
305,142 + -0.6
305,142 + -2.2
305,380 + MMP_RS01645 0.37 +0.8
305,542 + MMP_RS01645 0.60 -0.2
305,625 - MMP_RS01645 0.72 +0.1
305,630 - MMP_RS01645 0.73 +1.3
305,773 - -1.0
305,792 - +1.1
305,792 - +0.6
305,884 + +0.1
306,118 - MMP_RS01650 0.69 -0.1
306,169 + -0.4
306,174 - +0.5
306,210 - +1.3
306,323 - MMP_RS01655 0.37 +0.4
306,365 - MMP_RS01655 0.50 -1.6
306,499 + MMP_RS01655 0.88 +0.8
306,521 + +1.7
306,545 - +0.7
306,558 - +0.3
306,590 + +0.8
306,603 - +0.9
306,617 - +0.9
306,622 - +0.8
306,636 - +0.6
306,636 - -1.0
306,641 - +0.6
306,647 + -1.0
306,663 + -1.2
306,663 + +0.5
306,744 - MMP_RS01660 0.14 +1.5
306,745 + MMP_RS01660 0.14 -0.3
306,756 + MMP_RS01660 0.16 -0.6

Or see this region's nucleotide sequence