Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01065

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01060 and MMP_RS01065 are separated by 199 nucleotidesMMP_RS01065 and MMP_RS01070 are separated by 343 nucleotides MMP_RS01060: MMP_RS01060 - calcium/sodium antiporter, at 198,646 to 199,608 _RS01060 MMP_RS01065: MMP_RS01065 - alpha/beta hydrolase, at 199,808 to 200,512 _RS01065 MMP_RS01070: MMP_RS01070 - hypothetical protein, at 200,856 to 201,914 _RS01070 Position (kb) 199 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1at 198.820 kb on + strand, within MMP_RS01060at 198.820 kb on + strand, within MMP_RS01060at 198.903 kb on - strand, within MMP_RS01060at 198.914 kb on + strand, within MMP_RS01060at 198.930 kb on - strand, within MMP_RS01060at 198.930 kb on - strand, within MMP_RS01060at 198.930 kb on - strand, within MMP_RS01060at 198.931 kb on + strand, within MMP_RS01060at 198.959 kb on + strand, within MMP_RS01060at 199.182 kb on - strand, within MMP_RS01060at 199.182 kb on - strand, within MMP_RS01060at 199.184 kb on - strand, within MMP_RS01060at 199.184 kb on - strand, within MMP_RS01060at 199.185 kb on + strand, within MMP_RS01060at 199.186 kb on - strand, within MMP_RS01060at 199.189 kb on - strand, within MMP_RS01060at 199.197 kb on - strand, within MMP_RS01060at 199.216 kb on - strand, within MMP_RS01060at 199.283 kb on - strand, within MMP_RS01060at 199.318 kb on + strand, within MMP_RS01060at 199.345 kb on + strand, within MMP_RS01060at 199.345 kb on + strand, within MMP_RS01060at 199.540 kb on + strandat 199.564 kb on - strandat 199.586 kb on - strandat 199.586 kb on - strandat 199.586 kb on - strandat 199.587 kb on + strandat 199.587 kb on + strandat 199.608 kb on - strandat 199.608 kb on - strandat 199.655 kb on - strandat 199.656 kb on + strandat 199.661 kb on - strandat 199.662 kb on + strandat 199.663 kb on - strandat 199.664 kb on + strandat 199.670 kb on - strandat 199.694 kb on - strandat 199.708 kb on - strandat 199.708 kb on - strandat 199.708 kb on - strandat 199.721 kb on + strandat 199.721 kb on + strandat 199.782 kb on + strandat 199.848 kb on + strandat 199.862 kb on + strandat 199.869 kb on - strandat 199.938 kb on - strand, within MMP_RS01065at 199.946 kb on - strand, within MMP_RS01065at 199.946 kb on - strand, within MMP_RS01065at 199.972 kb on - strand, within MMP_RS01065at 199.972 kb on - strand, within MMP_RS01065at 199.972 kb on - strand, within MMP_RS01065at 199.973 kb on + strand, within MMP_RS01065at 199.997 kb on + strand, within MMP_RS01065at 200.037 kb on + strand, within MMP_RS01065at 200.037 kb on + strand, within MMP_RS01065at 200.037 kb on + strand, within MMP_RS01065at 200.060 kb on - strand, within MMP_RS01065at 200.093 kb on - strand, within MMP_RS01065at 200.094 kb on + strand, within MMP_RS01065at 200.156 kb on - strand, within MMP_RS01065at 200.189 kb on - strand, within MMP_RS01065at 200.189 kb on - strand, within MMP_RS01065at 200.197 kb on - strand, within MMP_RS01065at 200.202 kb on - strand, within MMP_RS01065at 200.212 kb on - strand, within MMP_RS01065at 200.256 kb on - strand, within MMP_RS01065at 200.257 kb on + strand, within MMP_RS01065at 200.283 kb on + strand, within MMP_RS01065at 200.549 kb on - strandat 200.630 kb on + strandat 200.643 kb on + strandat 200.644 kb on - strandat 200.644 kb on - strandat 200.644 kb on - strandat 200.644 kb on - strandat 200.650 kb on - strandat 200.941 kb on - strandat 200.942 kb on + strandat 200.980 kb on - strand, within MMP_RS01070at 200.980 kb on - strand, within MMP_RS01070at 200.980 kb on - strand, within MMP_RS01070at 200.986 kb on - strand, within MMP_RS01070at 200.998 kb on - strand, within MMP_RS01070at 201.098 kb on - strand, within MMP_RS01070at 201.159 kb on - strand, within MMP_RS01070at 201.237 kb on - strand, within MMP_RS01070at 201.282 kb on + strand, within MMP_RS01070at 201.334 kb on + strand, within MMP_RS01070at 201.336 kb on + strand, within MMP_RS01070at 201.342 kb on - strand, within MMP_RS01070at 201.379 kb on + strand, within MMP_RS01070at 201.380 kb on - strand, within MMP_RS01070at 201.391 kb on - strand, within MMP_RS01070at 201.392 kb on + strand, within MMP_RS01070at 201.437 kb on - strand, within MMP_RS01070at 201.443 kb on - strand, within MMP_RS01070at 201.461 kb on - strand, within MMP_RS01070at 201.466 kb on - strand, within MMP_RS01070at 201.504 kb on + strand, within MMP_RS01070

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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198,820 + MMP_RS01060 0.18 +0.2
198,820 + MMP_RS01060 0.18 +0.0
198,903 - MMP_RS01060 0.27 +0.9
198,914 + MMP_RS01060 0.28 +0.5
198,930 - MMP_RS01060 0.29 +1.5
198,930 - MMP_RS01060 0.29 -1.1
198,930 - MMP_RS01060 0.29 +0.8
198,931 + MMP_RS01060 0.30 +0.6
198,959 + MMP_RS01060 0.33 +0.1
199,182 - MMP_RS01060 0.56 -1.4
199,182 - MMP_RS01060 0.56 -0.4
199,184 - MMP_RS01060 0.56 +0.9
199,184 - MMP_RS01060 0.56 +0.2
199,185 + MMP_RS01060 0.56 +1.7
199,186 - MMP_RS01060 0.56 +0.8
199,189 - MMP_RS01060 0.56 +0.2
199,197 - MMP_RS01060 0.57 -0.4
199,216 - MMP_RS01060 0.59 +0.5
199,283 - MMP_RS01060 0.66 +1.1
199,318 + MMP_RS01060 0.70 +0.8
199,345 + MMP_RS01060 0.73 +0.8
199,345 + MMP_RS01060 0.73 +1.2
199,540 + -1.0
199,564 - +0.1
199,586 - +0.4
199,586 - +0.2
199,586 - +0.4
199,587 + +0.4
199,587 + +1.0
199,608 - +1.1
199,608 - +0.5
199,655 - +0.3
199,656 + -0.4
199,661 - +1.2
199,662 + +0.7
199,663 - +0.8
199,664 + +0.4
199,670 - -0.8
199,694 - +1.3
199,708 - +0.9
199,708 - -0.6
199,708 - +0.3
199,721 + +0.8
199,721 + +1.2
199,782 + +0.4
199,848 + +0.3
199,862 + +0.9
199,869 - -1.6
199,938 - MMP_RS01065 0.18 +1.3
199,946 - MMP_RS01065 0.20 -0.1
199,946 - MMP_RS01065 0.20 -0.3
199,972 - MMP_RS01065 0.23 +0.6
199,972 - MMP_RS01065 0.23 +0.9
199,972 - MMP_RS01065 0.23 +0.3
199,973 + MMP_RS01065 0.23 -0.4
199,997 + MMP_RS01065 0.27 -1.1
200,037 + MMP_RS01065 0.32 +0.7
200,037 + MMP_RS01065 0.32 +0.1
200,037 + MMP_RS01065 0.32 +0.4
200,060 - MMP_RS01065 0.36 -0.3
200,093 - MMP_RS01065 0.40 +0.5
200,094 + MMP_RS01065 0.41 +1.1
200,156 - MMP_RS01065 0.49 +0.5
200,189 - MMP_RS01065 0.54 +0.5
200,189 - MMP_RS01065 0.54 +0.7
200,197 - MMP_RS01065 0.55 -0.4
200,202 - MMP_RS01065 0.56 +0.8
200,212 - MMP_RS01065 0.57 +1.2
200,256 - MMP_RS01065 0.64 +1.6
200,257 + MMP_RS01065 0.64 -0.4
200,283 + MMP_RS01065 0.67 +1.1
200,549 - -0.1
200,630 + -1.9
200,643 + -1.5
200,644 - +0.6
200,644 - -1.7
200,644 - +0.8
200,644 - -0.3
200,650 - -0.3
200,941 - -1.7
200,942 + -0.1
200,980 - MMP_RS01070 0.12 -1.1
200,980 - MMP_RS01070 0.12 -0.0
200,980 - MMP_RS01070 0.12 +1.4
200,986 - MMP_RS01070 0.12 +1.7
200,998 - MMP_RS01070 0.13 +0.5
201,098 - MMP_RS01070 0.23 -1.8
201,159 - MMP_RS01070 0.29 +0.7
201,237 - MMP_RS01070 0.36 +0.9
201,282 + MMP_RS01070 0.40 +0.0
201,334 + MMP_RS01070 0.45 +0.6
201,336 + MMP_RS01070 0.45 -0.1
201,342 - MMP_RS01070 0.46 +0.6
201,379 + MMP_RS01070 0.49 +1.0
201,380 - MMP_RS01070 0.49 +0.4
201,391 - MMP_RS01070 0.51 -0.1
201,392 + MMP_RS01070 0.51 +0.9
201,437 - MMP_RS01070 0.55 -3.1
201,443 - MMP_RS01070 0.55 +1.0
201,461 - MMP_RS01070 0.57 +0.3
201,466 - MMP_RS01070 0.58 -0.1
201,504 + MMP_RS01070 0.61 +0.2

Or see this region's nucleotide sequence