Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00980

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00975 and MMP_RS00980 are separated by 142 nucleotidesMMP_RS00980 and MMP_RS00985 are separated by 24 nucleotides MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072 _RS00975 MMP_RS00980: MMP_RS00980 - hypothetical protein, at 183,215 to 183,679 _RS00980 MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070 _RS00985 Position (kb) 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.281 kb on - strand, within MMP_RS00975at 182.293 kb on + strand, within MMP_RS00975at 182.328 kb on - strand, within MMP_RS00975at 182.328 kb on - strand, within MMP_RS00975at 182.329 kb on + strand, within MMP_RS00975at 182.332 kb on - strand, within MMP_RS00975at 182.359 kb on - strand, within MMP_RS00975at 182.399 kb on + strand, within MMP_RS00975at 182.579 kb on + strand, within MMP_RS00975at 182.621 kb on + strand, within MMP_RS00975at 182.696 kb on + strand, within MMP_RS00975at 182.714 kb on - strand, within MMP_RS00975at 182.715 kb on + strand, within MMP_RS00975at 182.782 kb on - strand, within MMP_RS00975at 182.895 kb on - strand, within MMP_RS00975at 182.950 kb on + strandat 183.001 kb on - strandat 183.007 kb on - strandat 183.022 kb on + strandat 183.031 kb on + strandat 183.082 kb on - strandat 183.096 kb on - strandat 183.114 kb on - strandat 183.114 kb on - strandat 183.160 kb on - strandat 183.160 kb on - strandat 183.161 kb on + strandat 183.164 kb on - strandat 183.164 kb on - strandat 183.165 kb on + strandat 183.165 kb on + strandat 183.172 kb on + strandat 183.192 kb on - strandat 183.198 kb on - strandat 183.198 kb on - strandat 183.198 kb on - strandat 183.236 kb on - strandat 183.248 kb on + strandat 183.248 kb on + strandat 183.344 kb on - strand, within MMP_RS00980at 183.345 kb on + strand, within MMP_RS00980at 183.345 kb on + strand, within MMP_RS00980at 183.350 kb on - strand, within MMP_RS00980at 183.351 kb on + strand, within MMP_RS00980at 183.370 kb on - strand, within MMP_RS00980at 183.371 kb on + strand, within MMP_RS00980at 183.467 kb on - strand, within MMP_RS00980at 183.540 kb on - strand, within MMP_RS00980at 183.552 kb on - strand, within MMP_RS00980at 183.611 kb on - strand, within MMP_RS00980at 183.611 kb on - strand, within MMP_RS00980at 183.612 kb on + strand, within MMP_RS00980at 183.613 kb on - strand, within MMP_RS00980at 183.613 kb on - strand, within MMP_RS00980at 183.613 kb on - strand, within MMP_RS00980at 183.614 kb on + strand, within MMP_RS00980at 183.618 kb on - strand, within MMP_RS00980at 183.619 kb on + strand, within MMP_RS00980at 183.619 kb on + strand, within MMP_RS00980at 183.634 kb on - strandat 183.689 kb on + strandat 183.689 kb on + strandat 183.800 kb on + strandat 183.813 kb on + strandat 183.923 kb on - strandat 184.097 kb on - strand, within MMP_RS00985at 184.127 kb on - strand, within MMP_RS00985at 184.128 kb on + strand, within MMP_RS00985at 184.182 kb on + strand, within MMP_RS00985at 184.291 kb on - strand, within MMP_RS00985

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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182,281 - MMP_RS00975 0.42 +0.3
182,293 + MMP_RS00975 0.43 +1.4
182,328 - MMP_RS00975 0.46 +0.4
182,328 - MMP_RS00975 0.46 +0.4
182,329 + MMP_RS00975 0.46 +1.7
182,332 - MMP_RS00975 0.46 +0.2
182,359 - MMP_RS00975 0.48 +0.4
182,399 + MMP_RS00975 0.51 -0.2
182,579 + MMP_RS00975 0.64 +0.3
182,621 + MMP_RS00975 0.67 +0.3
182,696 + MMP_RS00975 0.73 +0.8
182,714 - MMP_RS00975 0.74 -1.3
182,715 + MMP_RS00975 0.74 +0.5
182,782 - MMP_RS00975 0.79 +0.4
182,895 - MMP_RS00975 0.87 +0.9
182,950 + +0.0
183,001 - -0.2
183,007 - +0.3
183,022 + -0.4
183,031 + +0.6
183,082 - +1.1
183,096 - -0.5
183,114 - -1.5
183,114 - +0.8
183,160 - -0.1
183,160 - -1.6
183,161 + +0.1
183,164 - -0.1
183,164 - +0.2
183,165 + -1.3
183,165 + +0.3
183,172 + +0.2
183,192 - -0.3
183,198 - -1.1
183,198 - -2.7
183,198 - +1.3
183,236 - +0.5
183,248 + -1.5
183,248 + -0.1
183,344 - MMP_RS00980 0.28 +0.7
183,345 + MMP_RS00980 0.28 -0.6
183,345 + MMP_RS00980 0.28 -0.4
183,350 - MMP_RS00980 0.29 +1.4
183,351 + MMP_RS00980 0.29 +0.3
183,370 - MMP_RS00980 0.33 +0.4
183,371 + MMP_RS00980 0.34 +0.7
183,467 - MMP_RS00980 0.54 +1.0
183,540 - MMP_RS00980 0.70 +1.7
183,552 - MMP_RS00980 0.72 -0.1
183,611 - MMP_RS00980 0.85 +2.2
183,611 - MMP_RS00980 0.85 +0.1
183,612 + MMP_RS00980 0.85 +0.7
183,613 - MMP_RS00980 0.86 -0.2
183,613 - MMP_RS00980 0.86 +0.7
183,613 - MMP_RS00980 0.86 +0.6
183,614 + MMP_RS00980 0.86 -2.0
183,618 - MMP_RS00980 0.87 +0.4
183,619 + MMP_RS00980 0.87 +0.4
183,619 + MMP_RS00980 0.87 +0.3
183,634 - -0.2
183,689 + +0.9
183,689 + -0.3
183,800 + +0.7
183,813 + +0.4
183,923 - -2.8
184,097 - MMP_RS00985 0.17 -3.3
184,127 - MMP_RS00985 0.18 -2.1
184,128 + MMP_RS00985 0.18 -3.2
184,182 + MMP_RS00985 0.20 -2.9
184,291 - MMP_RS00985 0.25 -2.3

Or see this region's nucleotide sequence