Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00855

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00850 and MMP_RS00855 are separated by 69 nucleotidesMMP_RS00855 and MMP_RS00860 are separated by 4 nucleotidesMMP_RS00860 and MMP_RS00865 are separated by 381 nucleotides MMP_RS00850: MMP_RS00850 - TIGR01177 family methyltransferase, at 159,965 to 161,017 _RS00850 MMP_RS00855: MMP_RS00855 - DUF367 family protein, at 161,087 to 161,602 _RS00855 MMP_RS00860: MMP_RS00860 - 50S ribosomal protein L40e, at 161,607 to 161,750 _RS00860 MMP_RS00865: MMP_RS00865 - SLC13 family permease, at 162,132 to 163,472 _RS00865 Position (kb) 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1at 160.119 kb on + strand, within MMP_RS00850at 160.185 kb on + strand, within MMP_RS00850at 160.344 kb on + strand, within MMP_RS00850at 160.481 kb on - strand, within MMP_RS00850at 160.542 kb on - strand, within MMP_RS00850at 160.787 kb on - strand, within MMP_RS00850at 161.052 kb on - strandat 161.052 kb on - strandat 161.052 kb on - strandat 161.059 kb on - strandat 161.060 kb on + strandat 161.067 kb on - strandat 161.067 kb on - strandat 161.067 kb on - strandat 161.068 kb on + strandat 161.068 kb on + strandat 161.069 kb on - strandat 161.069 kb on - strandat 161.069 kb on - strandat 161.070 kb on + strandat 161.070 kb on + strandat 161.071 kb on - strandat 161.071 kb on - strandat 161.071 kb on - strandat 161.072 kb on + strandat 161.072 kb on + strandat 161.100 kb on - strandat 161.101 kb on + strandat 161.102 kb on - strandat 161.102 kb on - strandat 161.134 kb on - strandat 161.134 kb on - strandat 161.176 kb on - strand, within MMP_RS00855at 161.214 kb on - strand, within MMP_RS00855at 161.260 kb on - strand, within MMP_RS00855at 161.262 kb on - strand, within MMP_RS00855at 161.408 kb on + strand, within MMP_RS00855at 161.436 kb on + strand, within MMP_RS00855at 161.436 kb on + strand, within MMP_RS00855at 161.749 kb on + strandat 161.867 kb on + strandat 161.885 kb on + strandat 161.916 kb on - strandat 161.981 kb on + strandat 162.004 kb on + strandat 162.007 kb on + strandat 162.030 kb on + strandat 162.030 kb on + strandat 162.036 kb on + strandat 162.037 kb on - strandat 162.053 kb on + strandat 162.117 kb on + strandat 162.117 kb on + strandat 162.117 kb on + strandat 162.444 kb on + strand, within MMP_RS00865

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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160,119 + MMP_RS00850 0.15 -1.6
160,185 + MMP_RS00850 0.21 -0.0
160,344 + MMP_RS00850 0.36 -1.0
160,481 - MMP_RS00850 0.49 -0.2
160,542 - MMP_RS00850 0.55 +0.9
160,787 - MMP_RS00850 0.78 -0.4
161,052 - +0.7
161,052 - +0.5
161,052 - +0.0
161,059 - -0.4
161,060 + -1.2
161,067 - +0.9
161,067 - +0.4
161,067 - +1.1
161,068 + -1.1
161,068 + -0.2
161,069 - -0.1
161,069 - -0.7
161,069 - -0.2
161,070 + -3.0
161,070 + +0.0
161,071 - +0.9
161,071 - +0.3
161,071 - +0.2
161,072 + +0.3
161,072 + +0.1
161,100 - +0.6
161,101 + +0.7
161,102 - +0.4
161,102 - +1.3
161,134 - +1.6
161,134 - +0.8
161,176 - MMP_RS00855 0.17 -0.1
161,214 - MMP_RS00855 0.25 +1.1
161,260 - MMP_RS00855 0.34 +1.7
161,262 - MMP_RS00855 0.34 +0.7
161,408 + MMP_RS00855 0.62 +0.9
161,436 + MMP_RS00855 0.68 +0.6
161,436 + MMP_RS00855 0.68 +1.1
161,749 + +1.0
161,867 + -1.7
161,885 + -0.5
161,916 - +1.0
161,981 + -1.1
162,004 + -0.4
162,007 + -0.0
162,030 + -0.4
162,030 + -0.5
162,036 + +0.0
162,037 - +1.0
162,053 + +0.2
162,117 + +0.2
162,117 + +0.1
162,117 + -0.9
162,444 + MMP_RS00865 0.23 +0.3

Or see this region's nucleotide sequence