Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00650

Experiment: H2 N-free with 10mM L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00645 and MMP_RS00650 overlap by 10 nucleotidesMMP_RS00650 and MMP_RS00655 are separated by 3 nucleotidesMMP_RS00655 and MMP_RS00660 are separated by 7 nucleotides MMP_RS00645: MMP_RS00645 - iron ABC transporter permease, at 117,416 to 119,032 _RS00645 MMP_RS00650: MMP_RS00650 - ABC transporter ATP-binding protein, at 119,023 to 119,991 _RS00650 MMP_RS00655: MMP_RS00655 - hypothetical protein, at 119,995 to 120,534 _RS00655 MMP_RS00660: MMP_RS00660 - alkaline phosphatase family protein, at 120,542 to 121,822 _RS00660 Position (kb) 119 120Strain fitness (log2 ratio) -1 0 1 2at 118.261 kb on - strand, within MMP_RS00645at 118.261 kb on - strand, within MMP_RS00645at 118.262 kb on + strand, within MMP_RS00645at 118.442 kb on + strand, within MMP_RS00645at 118.442 kb on + strand, within MMP_RS00645at 118.496 kb on - strand, within MMP_RS00645at 118.499 kb on + strand, within MMP_RS00645at 118.500 kb on - strand, within MMP_RS00645at 118.501 kb on + strand, within MMP_RS00645at 118.503 kb on - strand, within MMP_RS00645at 118.504 kb on + strand, within MMP_RS00645at 118.606 kb on - strand, within MMP_RS00645at 118.809 kb on - strand, within MMP_RS00645at 118.952 kb on - strandat 119.214 kb on - strand, within MMP_RS00650at 119.462 kb on - strand, within MMP_RS00650at 119.463 kb on + strand, within MMP_RS00650at 119.681 kb on + strand, within MMP_RS00650at 119.748 kb on + strand, within MMP_RS00650at 119.875 kb on - strand, within MMP_RS00650at 119.875 kb on - strand, within MMP_RS00650at 119.876 kb on + strand, within MMP_RS00650at 119.888 kb on + strand, within MMP_RS00650at 119.976 kb on - strandat 119.978 kb on - strandat 119.993 kb on - strandat 120.105 kb on - strand, within MMP_RS00655at 120.247 kb on - strand, within MMP_RS00655at 120.612 kb on - strandat 120.612 kb on - strandat 120.613 kb on + strandat 120.674 kb on - strand, within MMP_RS00660at 120.674 kb on - strand, within MMP_RS00660at 120.675 kb on + strand, within MMP_RS00660at 120.675 kb on + strand, within MMP_RS00660at 120.675 kb on + strand, within MMP_RS00660at 120.726 kb on + strand, within MMP_RS00660at 120.726 kb on + strand, within MMP_RS00660at 120.818 kb on + strand, within MMP_RS00660at 120.905 kb on + strand, within MMP_RS00660

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Citrulline
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118,261 - MMP_RS00645 0.52 +0.5
118,261 - MMP_RS00645 0.52 +0.9
118,262 + MMP_RS00645 0.52 -0.2
118,442 + MMP_RS00645 0.63 +0.6
118,442 + MMP_RS00645 0.63 +0.2
118,496 - MMP_RS00645 0.67 +0.2
118,499 + MMP_RS00645 0.67 +0.5
118,500 - MMP_RS00645 0.67 +0.6
118,501 + MMP_RS00645 0.67 +1.1
118,503 - MMP_RS00645 0.67 +2.2
118,504 + MMP_RS00645 0.67 +0.3
118,606 - MMP_RS00645 0.74 +0.2
118,809 - MMP_RS00645 0.86 -0.5
118,952 - +0.5
119,214 - MMP_RS00650 0.20 +0.7
119,462 - MMP_RS00650 0.45 -0.0
119,463 + MMP_RS00650 0.45 +0.6
119,681 + MMP_RS00650 0.68 +1.0
119,748 + MMP_RS00650 0.75 +1.2
119,875 - MMP_RS00650 0.88 +1.4
119,875 - MMP_RS00650 0.88 +1.9
119,876 + MMP_RS00650 0.88 +0.4
119,888 + MMP_RS00650 0.89 +0.8
119,976 - +0.1
119,978 - +0.0
119,993 - +1.8
120,105 - MMP_RS00655 0.20 +0.6
120,247 - MMP_RS00655 0.47 +0.7
120,612 - +0.3
120,612 - +1.1
120,613 + +0.5
120,674 - MMP_RS00660 0.10 +1.2
120,674 - MMP_RS00660 0.10 +0.7
120,675 + MMP_RS00660 0.10 +1.0
120,675 + MMP_RS00660 0.10 +1.0
120,675 + MMP_RS00660 0.10 +1.0
120,726 + MMP_RS00660 0.14 +0.2
120,726 + MMP_RS00660 0.14 +0.3
120,818 + MMP_RS00660 0.22 +1.4
120,905 + MMP_RS00660 0.28 +0.4

Or see this region's nucleotide sequence