Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03455

Experiment: H2 N-free with 10mM L-Valine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03445 and MMP_RS03450 are separated by 74 nucleotidesMMP_RS03450 and MMP_RS03455 are separated by 97 nucleotidesMMP_RS03455 and MMP_RS03460 are separated by 91 nucleotides MMP_RS03445: MMP_RS03445 - methanogenesis marker 17 protein, at 647,049 to 647,600 _RS03445 MMP_RS03450: MMP_RS03450 - glycine synthesis protein GlyXS (from data), at 647,675 to 647,947 _RS03450 MMP_RS03455: MMP_RS03455 - radical SAM protein, at 648,045 to 648,938 _RS03455 MMP_RS03460: MMP_RS03460 - U32 family peptidase, at 649,030 to 650,241 _RS03460 Position (kb) 648 649Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 647.055 kb on - strandat 647.407 kb on - strand, within MMP_RS03445at 647.695 kb on - strandat 647.797 kb on - strand, within MMP_RS03450at 647.797 kb on - strand, within MMP_RS03450at 647.852 kb on - strand, within MMP_RS03450at 647.951 kb on - strandat 647.951 kb on - strandat 648.008 kb on - strandat 648.008 kb on - strandat 648.009 kb on + strandat 648.015 kb on - strandat 648.086 kb on - strandat 648.087 kb on + strandat 648.117 kb on - strandat 648.186 kb on + strandat 648.261 kb on - strandat 648.262 kb on + strandat 648.262 kb on + strandat 648.508 kb on + strandat 648.718 kb on - strandat 648.902 kb on - strandat 648.903 kb on + strandat 648.905 kb on - strandat 648.927 kb on + strandat 649.014 kb on - strandat 649.019 kb on - strandat 649.032 kb on + strandat 649.042 kb on - strandat 649.043 kb on + strandat 649.043 kb on + strandat 649.050 kb on + strandat 649.116 kb on - strandat 649.173 kb on - strand, within MMP_RS03460at 649.173 kb on - strand, within MMP_RS03460at 649.222 kb on + strand, within MMP_RS03460at 649.252 kb on + strand, within MMP_RS03460at 649.339 kb on + strand, within MMP_RS03460at 649.367 kb on - strand, within MMP_RS03460at 649.405 kb on - strand, within MMP_RS03460at 649.424 kb on - strand, within MMP_RS03460at 649.425 kb on + strand, within MMP_RS03460at 649.485 kb on + strand, within MMP_RS03460at 649.535 kb on + strand, within MMP_RS03460at 649.693 kb on + strand, within MMP_RS03460at 649.696 kb on - strand, within MMP_RS03460at 649.768 kb on - strand, within MMP_RS03460at 649.769 kb on + strand, within MMP_RS03460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Valine
remove
647,055 - -3.4
647,407 - MMP_RS03445 0.65 -4.3
647,695 - -2.8
647,797 - MMP_RS03450 0.45 -3.7
647,797 - MMP_RS03450 0.45 -4.1
647,852 - MMP_RS03450 0.65 -4.6
647,951 - -5.0
647,951 - -2.9
648,008 - -0.9
648,008 - -2.3
648,009 + -2.7
648,015 - -0.0
648,086 - -2.2
648,087 + -2.8
648,117 - -3.4
648,186 + -1.2
648,261 - -3.5
648,262 + -4.2
648,262 + -2.9
648,508 + -2.7
648,718 - -2.8
648,902 - -4.5
648,903 + -3.2
648,905 - -4.0
648,927 + -4.0
649,014 - +0.2
649,019 - +0.6
649,032 + +0.4
649,042 - +0.5
649,043 + -0.5
649,043 + +0.9
649,050 + +0.6
649,116 - -0.2
649,173 - MMP_RS03460 0.12 +1.0
649,173 - MMP_RS03460 0.12 -2.1
649,222 + MMP_RS03460 0.16 +1.9
649,252 + MMP_RS03460 0.18 -0.1
649,339 + MMP_RS03460 0.25 +1.1
649,367 - MMP_RS03460 0.28 +0.8
649,405 - MMP_RS03460 0.31 -0.1
649,424 - MMP_RS03460 0.33 -0.2
649,425 + MMP_RS03460 0.33 +1.0
649,485 + MMP_RS03460 0.38 -0.1
649,535 + MMP_RS03460 0.42 -0.8
649,693 + MMP_RS03460 0.55 +0.4
649,696 - MMP_RS03460 0.55 +0.6
649,768 - MMP_RS03460 0.61 +0.4
649,769 + MMP_RS03460 0.61 +1.5

Or see this region's nucleotide sequence