Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03195

Experiment: H2 N-free with 10mM L-Valine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03185 and MMP_RS03190 are separated by 53 nucleotidesMMP_RS03190 and MMP_RS03195 are separated by 24 nucleotidesMMP_RS03195 and MMP_RS03200 are separated by 36 nucleotides MMP_RS03185: MMP_RS03185 - KH domain-containing protein, at 600,046 to 600,600 _RS03185 MMP_RS03190: MMP_RS03190 - RlmE family RNA methyltransferase, at 600,654 to 601,430 _RS03190 MMP_RS03195: MMP_RS03195 - global nitrogen regulator NrpR, at 601,455 to 603,065 _RS03195 MMP_RS03200: MMP_RS03200 - methanogenesis marker 15 protein, at 603,102 to 604,337 _RS03200 Position (kb) 601 602 603 604Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 600.632 kb on - strandat 600.744 kb on + strandat 600.781 kb on + strandat 600.841 kb on - strandat 600.842 kb on + strandat 601.029 kb on - strandat 601.279 kb on + strandat 601.300 kb on + strandat 601.320 kb on - strandat 601.337 kb on + strandat 601.337 kb on + strandat 601.442 kb on - strandat 601.443 kb on + strandat 601.909 kb on - strandat 602.076 kb on + strandat 602.332 kb on + strandat 602.616 kb on + strandat 602.640 kb on - strandat 602.646 kb on + strandat 603.390 kb on - strandat 603.854 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Valine
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600,632 - +0.2
600,744 + -2.3
600,781 + -2.5
600,841 - -0.9
600,842 + +0.3
601,029 - -2.1
601,279 + -0.9
601,300 + -3.9
601,320 - -0.8
601,337 + -2.2
601,337 + -2.1
601,442 - -2.3
601,443 + -3.3
601,909 - +1.2
602,076 + -0.2
602,332 + -0.6
602,616 + -0.1
602,640 - -0.3
602,646 + -0.4
603,390 - -0.2
603,854 - -2.1

Or see this region's nucleotide sequence