Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03375

Experiment: H2 N-free with 10mM L-Threonine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03360 and MMP_RS03365 are separated by 19 nucleotidesMMP_RS03365 and MMP_RS03370 are separated by 39 nucleotidesMMP_RS03370 and MMP_RS03375 are separated by 147 nucleotidesMMP_RS03375 and MMP_RS03380 are separated by 142 nucleotides MMP_RS03360: MMP_RS03360 - 50S ribosomal protein L24, at 632,868 to 633,056 _RS03360 MMP_RS03365: MMP_RS03365 - 30S ribosomal protein S28e, at 633,076 to 633,306 _RS03365 MMP_RS03370: MMP_RS03370 - 50S ribosomal protein L7Ae, at 633,346 to 633,699 _RS03370 MMP_RS03375: MMP_RS03375 - methanogenesis marker 12 protein, at 633,847 to 634,824 _RS03375 MMP_RS03380: MMP_RS03380 - DUF354 domain-containing protein, at 634,967 to 635,980 _RS03380 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2at 633.691 kb on - strandat 633.692 kb on + strandat 633.790 kb on - strandat 633.793 kb on + strandat 633.810 kb on + strandat 633.816 kb on - strandat 633.839 kb on - strandat 633.889 kb on - strandat 634.127 kb on - strandat 634.333 kb on - strandat 634.397 kb on - strandat 634.398 kb on + strandat 634.588 kb on - strandat 634.655 kb on + strandat 634.843 kb on - strandat 634.847 kb on + strandat 634.867 kb on - strandat 634.870 kb on + strandat 634.874 kb on + strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Threonine
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633,691 - +2.6
633,692 + -0.6
633,790 - -0.8
633,793 + +0.8
633,810 + -0.8
633,816 - -0.8
633,839 - +0.8
633,889 - -0.6
634,127 - +0.9
634,333 - -1.4
634,397 - -0.9
634,398 + -0.7
634,588 - -1.7
634,655 + -2.6
634,843 - +2.0
634,847 + -1.2
634,867 - -0.2
634,870 + -0.2
634,874 + +2.0
634,884 - +0.2
634,884 - -0.2
634,974 - -2.0

Or see this region's nucleotide sequence