Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05735

Experiment: H2 N-free with 10mM L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05730 and MMP_RS05735 are separated by 28 nucleotidesMMP_RS05735 and MMP_RS05740 overlap by 14 nucleotides MMP_RS05730: MMP_RS05730 - DUF373 family protein, at 1,099,029 to 1,100,138 _RS05730 MMP_RS05735: MMP_RS05735 - oligosaccharide repeat unit polymerase family protein, at 1,100,167 to 1,101,342 _RS05735 MMP_RS05740: MMP_RS05740 - oligosaccharide repeat unit polymerase family protein, at 1,101,329 to 1,102,402 _RS05740 Position (kb) 1100 1101 1102Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1099.287 kb on - strandat 1099.365 kb on - strandat 1099.405 kb on + strandat 1099.663 kb on - strandat 1099.781 kb on + strandat 1099.810 kb on + strandat 1099.863 kb on - strandat 1099.863 kb on - strandat 1099.863 kb on - strandat 1099.864 kb on + strandat 1099.864 kb on + strandat 1099.864 kb on + strandat 1100.030 kb on - strandat 1100.295 kb on + strandat 1100.310 kb on - strandat 1100.311 kb on + strandat 1100.332 kb on - strandat 1100.894 kb on + strandat 1100.960 kb on - strandat 1100.980 kb on - strandat 1101.022 kb on - strandat 1101.366 kb on - strandat 1101.448 kb on + strandat 1101.617 kb on - strandat 1101.897 kb on - strandat 1102.070 kb on - strandat 1102.071 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Arginine
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1,099,287 - -5.5
1,099,365 - -4.2
1,099,405 + -2.5
1,099,663 - -2.4
1,099,781 + -2.9
1,099,810 + -1.5
1,099,863 - -3.4
1,099,863 - -2.5
1,099,863 - -3.2
1,099,864 + -1.2
1,099,864 + -1.1
1,099,864 + -5.0
1,100,030 - -2.4
1,100,295 + -4.8
1,100,310 - -2.7
1,100,311 + -2.4
1,100,332 - -2.9
1,100,894 + +0.5
1,100,960 - +1.9
1,100,980 - -0.5
1,101,022 - -3.4
1,101,366 - -0.9
1,101,448 + -0.1
1,101,617 - -1.1
1,101,897 - -4.3
1,102,070 - -2.1
1,102,071 + -4.0

Or see this region's nucleotide sequence