Experiment: H2 N-free with 10mM B-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04425 and MMP_RS04430 are separated by 43 nucleotides MMP_RS04430 and MMP_RS04435 are separated by 27 nucleotides MMP_RS04435 and MMP_RS04440 are separated by 344 nucleotides
MMP_RS04425: MMP_RS04425 - APC family permease, at 841,312 to 842,565
_RS04425
MMP_RS04430: MMP_RS04430 - DUF1847 domain-containing protein, at 842,609 to 843,238
_RS04430
MMP_RS04435: MMP_RS04435 - pyridoxamine 5'-phosphate oxidase family protein, at 843,266 to 843,745
_RS04435
MMP_RS04440: MMP_RS04440 - nitrogenase iron protein, at 844,090 to 844,917
_RS04440
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1
2 at 841.647 kb on + strand, within MMP_RS04425 at 841.678 kb on - strand, within MMP_RS04425 at 841.679 kb on + strand, within MMP_RS04425 at 841.692 kb on + strand, within MMP_RS04425 at 841.709 kb on - strand, within MMP_RS04425 at 841.736 kb on - strand, within MMP_RS04425 at 841.767 kb on + strand, within MMP_RS04425 at 841.773 kb on - strand, within MMP_RS04425 at 841.778 kb on - strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.847 kb on - strand, within MMP_RS04425 at 841.847 kb on - strand, within MMP_RS04425 at 841.851 kb on - strand, within MMP_RS04425 at 841.862 kb on - strand, within MMP_RS04425 at 841.863 kb on + strand, within MMP_RS04425 at 841.867 kb on - strand, within MMP_RS04425 at 841.897 kb on + strand, within MMP_RS04425 at 841.970 kb on - strand, within MMP_RS04425 at 841.971 kb on + strand, within MMP_RS04425 at 841.973 kb on - strand, within MMP_RS04425 at 841.974 kb on + strand, within MMP_RS04425 at 841.974 kb on + strand, within MMP_RS04425 at 841.980 kb on + strand, within MMP_RS04425 at 841.992 kb on - strand, within MMP_RS04425 at 841.992 kb on - strand, within MMP_RS04425 at 841.993 kb on + strand, within MMP_RS04425 at 841.994 kb on - strand, within MMP_RS04425 at 842.031 kb on + strand, within MMP_RS04425 at 842.054 kb on - strand, within MMP_RS04425 at 842.055 kb on + strand, within MMP_RS04425 at 842.081 kb on - strand, within MMP_RS04425 at 842.081 kb on - strand, within MMP_RS04425 at 842.084 kb on - strand, within MMP_RS04425 at 842.116 kb on + strand, within MMP_RS04425 at 842.116 kb on + strand, within MMP_RS04425 at 842.117 kb on - strand, within MMP_RS04425 at 842.127 kb on - strand, within MMP_RS04425 at 842.130 kb on - strand, within MMP_RS04425 at 842.244 kb on - strand, within MMP_RS04425 at 842.300 kb on - strand, within MMP_RS04425 at 842.311 kb on - strand, within MMP_RS04425 at 842.493 kb on + strand at 842.495 kb on - strand at 842.496 kb on + strand at 842.548 kb on + strand at 842.552 kb on + strand at 842.617 kb on - strand at 842.640 kb on - strand at 842.647 kb on - strand at 842.648 kb on + strand at 842.774 kb on + strand, within MMP_RS04430 at 842.879 kb on - strand, within MMP_RS04430 at 842.950 kb on - strand, within MMP_RS04430 at 842.951 kb on + strand, within MMP_RS04430 at 843.002 kb on - strand, within MMP_RS04430 at 843.011 kb on + strand, within MMP_RS04430 at 843.012 kb on - strand, within MMP_RS04430 at 843.038 kb on + strand, within MMP_RS04430 at 843.094 kb on - strand, within MMP_RS04430 at 843.095 kb on + strand, within MMP_RS04430 at 843.129 kb on + strand, within MMP_RS04430 at 843.302 kb on - strand at 843.386 kb on - strand, within MMP_RS04435 at 843.387 kb on + strand, within MMP_RS04435 at 843.402 kb on + strand, within MMP_RS04435 at 843.416 kb on + strand, within MMP_RS04435 at 843.419 kb on - strand, within MMP_RS04435 at 843.425 kb on - strand, within MMP_RS04435 at 843.426 kb on + strand, within MMP_RS04435 at 843.505 kb on + strand, within MMP_RS04435 at 843.623 kb on - strand, within MMP_RS04435 at 843.623 kb on - strand, within MMP_RS04435 at 843.629 kb on - strand, within MMP_RS04435 at 843.629 kb on - strand, within MMP_RS04435 at 843.630 kb on + strand, within MMP_RS04435 at 843.645 kb on - strand, within MMP_RS04435 at 843.645 kb on - strand, within MMP_RS04435 at 843.651 kb on - strand, within MMP_RS04435 at 843.663 kb on + strand, within MMP_RS04435 at 843.682 kb on - strand, within MMP_RS04435 at 843.682 kb on - strand, within MMP_RS04435 at 843.682 kb on - strand, within MMP_RS04435 at 843.701 kb on - strand at 843.708 kb on - strand at 843.708 kb on - strand at 843.779 kb on + strand at 843.781 kb on - strand at 843.781 kb on - strand at 843.782 kb on + strand at 843.803 kb on - strand at 843.803 kb on - strand at 843.804 kb on + strand at 843.808 kb on - strand at 843.812 kb on - strand at 843.816 kb on + strand at 843.822 kb on + strand at 843.822 kb on + strand at 843.824 kb on - strand at 843.824 kb on - strand at 843.824 kb on - strand at 843.825 kb on + strand at 843.845 kb on + strand at 843.845 kb on + strand at 843.932 kb on + strand at 843.997 kb on - strand at 843.998 kb on + strand at 843.998 kb on + strand at 843.998 kb on + strand at 844.072 kb on - strand at 844.072 kb on - strand at 844.072 kb on - strand at 844.072 kb on - strand at 844.072 kb on - strand at 844.073 kb on + strand at 844.073 kb on + strand at 844.073 kb on + strand at 844.073 kb on + strand at 844.074 kb on - strand at 844.074 kb on - strand at 844.074 kb on - strand at 844.075 kb on + strand at 844.075 kb on + strand at 844.076 kb on - strand at 844.076 kb on - strand at 844.076 kb on - strand at 844.077 kb on + strand at 844.077 kb on + strand at 844.112 kb on + strand at 844.225 kb on + strand, within MMP_RS04440
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM B-Alanine remove 841,647 + MMP_RS04425 0.27 +0.3 841,678 - MMP_RS04425 0.29 -0.3 841,679 + MMP_RS04425 0.29 -1.1 841,692 + MMP_RS04425 0.30 -1.3 841,709 - MMP_RS04425 0.32 +0.2 841,736 - MMP_RS04425 0.34 +0.1 841,767 + MMP_RS04425 0.36 +0.9 841,773 - MMP_RS04425 0.37 -0.3 841,778 - MMP_RS04425 0.37 +0.8 841,785 + MMP_RS04425 0.38 +0.9 841,785 + MMP_RS04425 0.38 +1.4 841,785 + MMP_RS04425 0.38 +0.4 841,847 - MMP_RS04425 0.43 +0.8 841,847 - MMP_RS04425 0.43 +0.8 841,851 - MMP_RS04425 0.43 +0.9 841,862 - MMP_RS04425 0.44 +0.1 841,863 + MMP_RS04425 0.44 -0.8 841,867 - MMP_RS04425 0.44 -0.7 841,897 + MMP_RS04425 0.47 +0.4 841,970 - MMP_RS04425 0.52 -0.1 841,971 + MMP_RS04425 0.53 +0.3 841,973 - MMP_RS04425 0.53 -0.6 841,974 + MMP_RS04425 0.53 -1.3 841,974 + MMP_RS04425 0.53 +0.4 841,980 + MMP_RS04425 0.53 +0.2 841,992 - MMP_RS04425 0.54 -1.0 841,992 - MMP_RS04425 0.54 -0.2 841,993 + MMP_RS04425 0.54 -0.2 841,994 - MMP_RS04425 0.54 +0.9 842,031 + MMP_RS04425 0.57 -0.5 842,054 - MMP_RS04425 0.59 -0.0 842,055 + MMP_RS04425 0.59 +0.6 842,081 - MMP_RS04425 0.61 -0.1 842,081 - MMP_RS04425 0.61 -0.1 842,084 - MMP_RS04425 0.62 -0.3 842,116 + MMP_RS04425 0.64 -0.2 842,116 + MMP_RS04425 0.64 +0.9 842,117 - MMP_RS04425 0.64 +0.5 842,127 - MMP_RS04425 0.65 -0.1 842,130 - MMP_RS04425 0.65 +1.3 842,244 - MMP_RS04425 0.74 -0.2 842,300 - MMP_RS04425 0.79 -0.2 842,311 - MMP_RS04425 0.80 +0.5 842,493 + +0.4 842,495 - -0.4 842,496 + +1.3 842,548 + +0.5 842,552 + -0.4 842,617 - -0.7 842,640 - -0.2 842,647 - +0.5 842,648 + +0.7 842,774 + MMP_RS04430 0.26 -2.0 842,879 - MMP_RS04430 0.43 -0.8 842,950 - MMP_RS04430 0.54 +0.8 842,951 + MMP_RS04430 0.54 +0.7 843,002 - MMP_RS04430 0.62 -0.7 843,011 + MMP_RS04430 0.64 -0.3 843,012 - MMP_RS04430 0.64 -1.5 843,038 + MMP_RS04430 0.68 -0.1 843,094 - MMP_RS04430 0.77 +0.3 843,095 + MMP_RS04430 0.77 +0.1 843,129 + MMP_RS04430 0.83 -0.7 843,302 - +0.7 843,386 - MMP_RS04435 0.25 +0.4 843,387 + MMP_RS04435 0.25 -1.8 843,402 + MMP_RS04435 0.28 -0.3 843,416 + MMP_RS04435 0.31 +0.2 843,419 - MMP_RS04435 0.32 -1.3 843,425 - MMP_RS04435 0.33 -0.1 843,426 + MMP_RS04435 0.33 -2.6 843,505 + MMP_RS04435 0.50 -0.7 843,623 - MMP_RS04435 0.74 -0.3 843,623 - MMP_RS04435 0.74 -0.7 843,629 - MMP_RS04435 0.76 -2.1 843,629 - MMP_RS04435 0.76 +0.6 843,630 + MMP_RS04435 0.76 +0.6 843,645 - MMP_RS04435 0.79 +0.9 843,645 - MMP_RS04435 0.79 -0.8 843,651 - MMP_RS04435 0.80 -0.1 843,663 + MMP_RS04435 0.83 +1.4 843,682 - MMP_RS04435 0.87 +0.8 843,682 - MMP_RS04435 0.87 +1.0 843,682 - MMP_RS04435 0.87 -0.8 843,701 - +1.0 843,708 - +0.7 843,708 - +0.8 843,779 + -0.0 843,781 - -0.2 843,781 - +0.4 843,782 + +0.7 843,803 - +0.4 843,803 - +0.8 843,804 + -1.0 843,808 - -0.5 843,812 - +0.4 843,816 + +0.9 843,822 + -0.0 843,822 + +0.3 843,824 - +0.0 843,824 - +0.5 843,824 - +0.3 843,825 + -0.6 843,845 + +0.4 843,845 + -0.2 843,932 + -0.0 843,997 - +0.4 843,998 + -0.1 843,998 + +0.1 843,998 + -0.6 844,072 - -0.8 844,072 - -0.1 844,072 - +2.7 844,072 - -1.8 844,072 - +0.1 844,073 + -1.0 844,073 + +0.2 844,073 + -1.2 844,073 + -0.3 844,074 - +0.6 844,074 - +0.3 844,074 - +0.7 844,075 + +1.0 844,075 + +0.5 844,076 - -0.4 844,076 - +0.2 844,076 - +1.2 844,077 + -0.0 844,077 + +1.7 844,112 + -0.2 844,225 + MMP_RS04440 0.16 -0.5
Or see this region's nucleotide sequence