Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06645

Experiment: H2 N-free with 10mM Cytidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06635 and MMP_RS06640 are separated by 62 nucleotidesMMP_RS06640 and MMP_RS06645 are separated by 125 nucleotidesMMP_RS06645 and MMP_RS06650 are separated by 16 nucleotides MMP_RS06635: MMP_RS06635 - UbiD family decarboxylase, at 1,271,031 to 1,272,308 _RS06635 MMP_RS06640: MMP_RS06640 - 50S ribosomal protein L16, at 1,272,371 to 1,272,892 _RS06640 MMP_RS06645: MMP_RS06645 - GTP-binding protein EngB, at 1,273,018 to 1,273,710 _RS06645 MMP_RS06650: MMP_RS06650 - glycoside hydrolase family 57 protein, at 1,273,727 to 1,274,950 _RS06650 Position (kb) 1273 1274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1272.152 kb on - strandat 1272.325 kb on + strandat 1272.380 kb on + strandat 1272.674 kb on - strandat 1272.953 kb on + strandat 1273.058 kb on + strandat 1273.250 kb on + strandat 1273.365 kb on - strandat 1273.366 kb on + strandat 1273.466 kb on - strandat 1273.467 kb on + strandat 1273.712 kb on - strandat 1273.737 kb on - strandat 1273.878 kb on - strand, within MMP_RS06650at 1273.912 kb on + strand, within MMP_RS06650at 1273.925 kb on - strand, within MMP_RS06650at 1273.926 kb on + strand, within MMP_RS06650at 1273.977 kb on - strand, within MMP_RS06650at 1274.111 kb on + strand, within MMP_RS06650at 1274.182 kb on + strand, within MMP_RS06650at 1274.258 kb on + strand, within MMP_RS06650at 1274.342 kb on + strand, within MMP_RS06650at 1274.388 kb on + strand, within MMP_RS06650at 1274.438 kb on + strand, within MMP_RS06650at 1274.527 kb on - strand, within MMP_RS06650at 1274.561 kb on - strand, within MMP_RS06650at 1274.585 kb on + strand, within MMP_RS06650

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Cytidine
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1,272,152 - -1.9
1,272,325 + +0.6
1,272,380 + -1.5
1,272,674 - -3.2
1,272,953 + +2.7
1,273,058 + -1.0
1,273,250 + -1.9
1,273,365 - -3.4
1,273,366 + -1.3
1,273,466 - -1.0
1,273,467 + -1.4
1,273,712 - +0.9
1,273,737 - +0.9
1,273,878 - MMP_RS06650 0.12 +0.7
1,273,912 + MMP_RS06650 0.15 +0.4
1,273,925 - MMP_RS06650 0.16 +1.8
1,273,926 + MMP_RS06650 0.16 +0.3
1,273,977 - MMP_RS06650 0.20 +2.1
1,274,111 + MMP_RS06650 0.31 +1.5
1,274,182 + MMP_RS06650 0.37 +1.0
1,274,258 + MMP_RS06650 0.43 +0.6
1,274,342 + MMP_RS06650 0.50 +0.9
1,274,388 + MMP_RS06650 0.54 +2.6
1,274,438 + MMP_RS06650 0.58 +2.2
1,274,527 - MMP_RS06650 0.65 +0.2
1,274,561 - MMP_RS06650 0.68 -1.1
1,274,585 + MMP_RS06650 0.70 +0.8

Or see this region's nucleotide sequence