Experiment: H2 N-free with 10mM Thymidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03500 and MMP_RS03505 are separated by 29 nucleotides MMP_RS03505 and MMP_RS03510 are separated by 12 nucleotides MMP_RS03510 and MMP_RS03515 are separated by 85 nucleotides
MMP_RS03500: MMP_RS03500 - 30S ribosomal protein S2, at 657,133 to 657,795
_RS03500
MMP_RS03505: MMP_RS03505 - hypothetical protein, at 657,825 to 658,433
_RS03505
MMP_RS03510: MMP_RS03510 - 30S ribosomal protein S3ae, at 658,446 to 659,123
_RS03510
MMP_RS03515: MMP_RS03515 - DMT family transporter, at 659,209 to 660,099
_RS03515
Position (kb) 657
658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 656.835 kb on - strand at 656.838 kb on - strand at 656.914 kb on - strand at 656.926 kb on - strand at 656.977 kb on - strand at 659.033 kb on - strand at 659.093 kb on + strand at 659.277 kb on + strand at 659.301 kb on - strand, within MMP_RS03515 at 659.302 kb on + strand, within MMP_RS03515 at 659.366 kb on - strand, within MMP_RS03515 at 659.404 kb on - strand, within MMP_RS03515 at 659.405 kb on + strand, within MMP_RS03515 at 659.405 kb on + strand, within MMP_RS03515 at 659.433 kb on - strand, within MMP_RS03515
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM Thymidine remove 656,835 - +1.0 656,838 - -2.8 656,914 - -0.3 656,926 - -0.3 656,977 - -0.3 659,033 - -1.1 659,093 + +0.2 659,277 + -0.3 659,301 - MMP_RS03515 0.10 -1.3 659,302 + MMP_RS03515 0.10 +0.1 659,366 - MMP_RS03515 0.18 +1.8 659,404 - MMP_RS03515 0.22 +0.3 659,405 + MMP_RS03515 0.22 +0.2 659,405 + MMP_RS03515 0.22 +1.5 659,433 - MMP_RS03515 0.25 +0.8
Or see this region's nucleotide sequence