Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17420

Experiment: Planktonic; Day4; SGW; pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Planktonic; Day4; SGW; pH7
3,806,077	+		LRK54_RS17415	0.23	+4.0
3,806,077	+		LRK54_RS17415	0.23	-0.8
3,806,077	+		LRK54_RS17415	0.23	-0.1
3,806,077	+		LRK54_RS17415	0.23	-0.8
3,806,077	+		LRK54_RS17415	0.23	+0.7
3,806,077	+		LRK54_RS17415	0.23	-1.4
3,806,077	+		LRK54_RS17415	0.23	+0.8
3,806,077	+		LRK54_RS17415	0.23	-2.4
3,806,077	+		LRK54_RS17415	0.23	+2.4
3,806,077	+		LRK54_RS17415	0.23	-0.2
3,806,077	+		LRK54_RS17415	0.23	-0.8
3,806,078	-		LRK54_RS17415	0.23	+0.1
3,806,078	-		LRK54_RS17415	0.23	+2.4
3,806,078	-		LRK54_RS17415	0.23	+3.8
3,806,078	-		LRK54_RS17415	0.23	+3.9
3,806,078	-		LRK54_RS17415	0.23	-0.6
3,806,078	-		LRK54_RS17415	0.23	-0.5
3,806,078	-		LRK54_RS17415	0.23	+0.3
3,806,078	-		LRK54_RS17415	0.23	-0.3
3,806,078	-		LRK54_RS17415	0.23	+1.0
3,806,078	-		LRK54_RS17415	0.23	+1.2
3,806,179	+		LRK54_RS17415	0.32	-2.0
3,806,179	+		LRK54_RS17415	0.32	-1.9
3,806,180	-		LRK54_RS17415	0.32	+0.2
3,806,180	-		LRK54_RS17415	0.32	+0.5
3,806,180	-		LRK54_RS17415	0.32	-2.6
3,806,180	-		LRK54_RS17415	0.32	+1.2
3,806,180	-		LRK54_RS17415	0.32	+0.7
3,806,180	-		LRK54_RS17415	0.32	-1.7
3,806,180	-		LRK54_RS17415	0.32	+2.7
3,806,180	-		LRK54_RS17415	0.32	-0.7
3,806,230	+		LRK54_RS17415	0.36	+2.3
3,806,230	+		LRK54_RS17415	0.36	+0.9
3,806,230	+		LRK54_RS17415	0.36	+1.6
3,806,230	+		LRK54_RS17415	0.36	+2.0
3,806,230	+		LRK54_RS17415	0.36	-0.8
3,806,230	+		LRK54_RS17415	0.36	-0.5
3,806,230	+		LRK54_RS17415	0.36	-0.3
3,806,230	+		LRK54_RS17415	0.36	+1.2
3,806,230	+		LRK54_RS17415	0.36	+0.3
3,806,230	+		LRK54_RS17415	0.36	+0.0
3,806,230	+		LRK54_RS17415	0.36	-3.1
3,806,230	+		LRK54_RS17415	0.36	+0.5
3,806,230	+		LRK54_RS17415	0.36	-2.6
3,806,230	+		LRK54_RS17415	0.36	-0.2
3,806,230	+		LRK54_RS17415	0.36	+0.5
3,806,231	-		LRK54_RS17415	0.36	-2.4
3,806,231	-		LRK54_RS17415	0.36	-1.7
3,806,231	-		LRK54_RS17415	0.36	-0.9
3,806,231	-		LRK54_RS17415	0.36	-0.5
3,806,231	-		LRK54_RS17415	0.36	-2.2
3,806,231	-		LRK54_RS17415	0.36	+0.7
3,806,231	-		LRK54_RS17415	0.36	+0.2
3,806,231	-		LRK54_RS17415	0.36	-1.0
3,806,231	-		LRK54_RS17415	0.36	-1.4
3,806,231	-		LRK54_RS17415	0.36	+0.2
3,806,231	-		LRK54_RS17415	0.36	-0.7
3,806,231	-		LRK54_RS17415	0.36	+0.3
3,806,231	-		LRK54_RS17415	0.36	-2.5
3,806,231	-		LRK54_RS17415	0.36	+0.5
3,806,231	-		LRK54_RS17415	0.36	-2.9
3,806,231	-		LRK54_RS17415	0.36	-1.9
3,806,231	-		LRK54_RS17415	0.36	+0.1
3,806,231	-		LRK54_RS17415	0.36	-0.7
3,806,425	+		LRK54_RS17415	0.52	-0.3
3,806,425	+		LRK54_RS17415	0.52	-2.3
3,806,425	+		LRK54_RS17415	0.52	-0.5
3,806,425	+		LRK54_RS17415	0.52	+0.5
3,806,425	+		LRK54_RS17415	0.52	+2.0
3,806,426	-		LRK54_RS17415	0.53	-1.1
3,806,426	-		LRK54_RS17415	0.53	+0.3
3,806,426	-		LRK54_RS17415	0.53	+1.2
3,806,431	+		LRK54_RS17415	0.53	+2.0
3,806,431	+		LRK54_RS17415	0.53	+0.5
3,806,432	-		LRK54_RS17415	0.53	+4.0
3,806,432	-		LRK54_RS17415	0.53	+2.6
3,806,432	-		LRK54_RS17415	0.53	-0.2
3,806,432	-		LRK54_RS17415	0.53	+0.0
3,806,432	-		LRK54_RS17415	0.53	-0.2
3,806,432	-		LRK54_RS17415	0.53	-0.7
3,806,432	-		LRK54_RS17415	0.53	-0.4
3,806,432	-		LRK54_RS17415	0.53	-2.8
3,806,632	+		LRK54_RS17415	0.70	-0.8
3,806,632	+		LRK54_RS17415	0.70	-1.6
3,806,632	+		LRK54_RS17415	0.70	-2.6
3,806,632	+		LRK54_RS17415	0.70	+0.1
3,806,632	+		LRK54_RS17415	0.70	+0.7
3,806,632	+		LRK54_RS17415	0.70	-3.1
3,806,632	+		LRK54_RS17415	0.70	-0.9
3,806,632	+		LRK54_RS17415	0.70	-0.7
3,806,632	+		LRK54_RS17415	0.70	-1.5
3,806,632	+		LRK54_RS17415	0.70	-0.4
3,806,632	+		LRK54_RS17415	0.70	+1.0
3,806,632	+		LRK54_RS17415	0.70	-0.5
3,806,632	+		LRK54_RS17415	0.70	+1.0
3,806,632	+		LRK54_RS17415	0.70	-1.5
3,806,632	+		LRK54_RS17415	0.70	-2.2
3,806,632	+		LRK54_RS17415	0.70	-2.6
3,806,632	+		LRK54_RS17415	0.70	-1.3
3,806,632	+		LRK54_RS17415	0.70	-1.3
3,806,632	+		LRK54_RS17415	0.70	+0.1
3,806,632	+		LRK54_RS17415	0.70	-1.5
3,806,633	-		LRK54_RS17415	0.70	-1.5
3,806,633	-		LRK54_RS17415	0.70	-0.2
3,806,633	-		LRK54_RS17415	0.70	+0.7
3,806,633	-		LRK54_RS17415	0.70	+1.2
3,806,633	-		LRK54_RS17415	0.70	-1.0
3,806,633	-		LRK54_RS17415	0.70	+0.7
3,806,633	-		LRK54_RS17415	0.70	-1.3
3,806,633	-		LRK54_RS17415	0.70	+3.0
3,806,633	-		LRK54_RS17415	0.70	+0.7
3,806,633	-		LRK54_RS17415	0.70	-1.4
3,806,633	-		LRK54_RS17415	0.70	-1.3
3,806,633	-		LRK54_RS17415	0.70	-1.8
3,806,633	-		LRK54_RS17415	0.70	-0.4
3,806,633	-		LRK54_RS17415	0.70	-1.0
3,806,633	-		LRK54_RS17415	0.70	-0.4
3,806,633	-		LRK54_RS17415	0.70	+0.4
3,806,633	-		LRK54_RS17415	0.70	+0.1
3,806,633	-		LRK54_RS17415	0.70	+0.2
3,806,633	-		LRK54_RS17415	0.70	+3.6
3,806,683	+		LRK54_RS17415	0.74	-1.7
3,806,683	+		LRK54_RS17415	0.74	-0.9
3,806,683	+		LRK54_RS17415	0.74	-1.2
3,806,683	+		LRK54_RS17415	0.74	+0.3
3,806,683	+		LRK54_RS17415	0.74	+1.0
3,806,683	+		LRK54_RS17415	0.74	-0.1
3,806,684	-		LRK54_RS17415	0.74	-0.3
3,806,684	-		LRK54_RS17415	0.74	+0.4
3,806,767	+		LRK54_RS17415	0.81	-1.6
3,806,767	+		LRK54_RS17415	0.81	-0.1
3,806,767	+		LRK54_RS17415	0.81	+2.0
3,806,767	+		LRK54_RS17415	0.81	-1.1
3,806,767	+		LRK54_RS17415	0.81	-1.0
3,806,767	+		LRK54_RS17415	0.81	-1.2
3,806,767	+		LRK54_RS17415	0.81	-1.5
3,806,767	+		LRK54_RS17415	0.81	-0.3
3,806,767	+		LRK54_RS17415	0.81	+3.0
3,806,767	+		LRK54_RS17415	0.81	-0.2
3,806,767	+		LRK54_RS17415	0.81	-1.4
3,806,767	+		LRK54_RS17415	0.81	+0.8
3,806,767	+		LRK54_RS17415	0.81	-0.6
3,806,767	+		LRK54_RS17415	0.81	+0.3
3,806,768	-		LRK54_RS17415	0.81	+1.2
3,806,768	-		LRK54_RS17415	0.81	+0.9
3,806,768	-		LRK54_RS17415	0.81	-2.3
3,806,768	-		LRK54_RS17415	0.81	-0.3
3,806,768	-		LRK54_RS17415	0.81	-1.4
3,806,768	-		LRK54_RS17415	0.81	-1.5
3,806,768	-		LRK54_RS17415	0.81	-0.7
3,806,768	-		LRK54_RS17415	0.81	+1.0
3,806,768	-		LRK54_RS17415	0.81	-1.4
3,806,768	-		LRK54_RS17415	0.81	-1.9
3,806,768	-		LRK54_RS17415	0.81	+3.0
3,806,768	-		LRK54_RS17415	0.81	-2.1
3,806,768	-		LRK54_RS17415	0.81	+0.4
3,806,768	-		LRK54_RS17415	0.81	-0.5
3,806,768	-		LRK54_RS17415	0.81	-1.2
3,806,768	-		LRK54_RS17415	0.81	-1.5
3,806,768	-		LRK54_RS17415	0.81	-1.3
3,806,768	-		LRK54_RS17415	0.81	-2.8
3,806,785	+		LRK54_RS17415	0.83	+2.6
3,806,785	+		LRK54_RS17415	0.83	+0.8
3,806,785	+		LRK54_RS17415	0.83	+0.3
3,806,786	-		LRK54_RS17415	0.83	-0.7
3,806,786	-		LRK54_RS17415	0.83	-0.4
3,806,786	-		LRK54_RS17415	0.83	+1.2
3,806,842	-		LRK54_RS17415	0.87	+0.7
3,806,842	-		LRK54_RS17415	0.87	-2.0
3,807,104	+				-2.0
3,807,104	+				-0.0
3,807,104	+				-0.5
3,807,104	+				-3.5
3,807,104	+				-1.9
3,807,104	+				+0.8
3,807,104	+				-2.1
3,807,105	-				-1.1
3,807,105	-				+0.7
3,807,105	-				-2.0
3,807,135	+		LRK54_RS17420	0.10	-1.0
3,807,135	+		LRK54_RS17420	0.10	-2.2
3,807,135	+		LRK54_RS17420	0.10	-2.8
3,807,135	+		LRK54_RS17420	0.10	-0.2
3,807,135	+		LRK54_RS17420	0.10	+0.0
3,807,135	+		LRK54_RS17420	0.10	-0.1
3,807,135	+		LRK54_RS17420	0.10	-0.2
3,807,135	+		LRK54_RS17420	0.10	-1.1
3,807,135	+		LRK54_RS17420	0.10	-0.5
3,807,135	+		LRK54_RS17420	0.10	+3.0
3,807,135	+		LRK54_RS17420	0.10	+1.2
3,807,136	-		LRK54_RS17420	0.11	-1.5
3,807,136	-		LRK54_RS17420	0.11	+0.1
3,807,136	-		LRK54_RS17420	0.11	-0.8
3,807,136	-		LRK54_RS17420	0.11	+0.7
3,807,136	-		LRK54_RS17420	0.11	-0.3
3,807,511	-		LRK54_RS17420	0.37	+1.2
3,807,531	+		LRK54_RS17420	0.38	-1.2
3,807,531	+		LRK54_RS17420	0.38	-0.2
3,807,531	+		LRK54_RS17420	0.38	-2.4
3,807,531	+		LRK54_RS17420	0.38	-1.1
3,807,531	+		LRK54_RS17420	0.38	-2.1
3,807,531	+		LRK54_RS17420	0.38	+0.2
3,807,531	+		LRK54_RS17420	0.38	+4.0
3,807,531	+		LRK54_RS17420	0.38	-0.9
3,807,531	+		LRK54_RS17420	0.38	+0.5
3,807,531	+		LRK54_RS17420	0.38	-1.6
3,807,531	+		LRK54_RS17420	0.38	-2.3
3,807,532	-		LRK54_RS17420	0.38	+1.2
3,807,532	-		LRK54_RS17420	0.38	+0.3
3,807,532	-		LRK54_RS17420	0.38	+1.0
3,807,532	-		LRK54_RS17420	0.38	-0.6
3,807,532	-		LRK54_RS17420	0.38	-0.7
3,807,532	-		LRK54_RS17420	0.38	-0.2
3,807,532	-		LRK54_RS17420	0.38	+0.3
3,807,532	-		LRK54_RS17420	0.38	-0.2
3,807,532	-		LRK54_RS17420	0.38	-2.6
3,807,532	-		LRK54_RS17420	0.38	-3.0
3,807,532	-		LRK54_RS17420	0.38	-0.1
3,807,532	-		LRK54_RS17420	0.38	-1.1
3,807,532	-		LRK54_RS17420	0.38	-0.3
3,807,532	-		LRK54_RS17420	0.38	-1.4
3,807,532	-		LRK54_RS17420	0.38	+1.7
3,807,532	-		LRK54_RS17420	0.38	-1.4
3,807,939	+		LRK54_RS17420	0.67	-0.6
3,807,939	+		LRK54_RS17420	0.67	-2.3
3,807,939	+		LRK54_RS17420	0.67	-0.5
3,807,939	+		LRK54_RS17420	0.67	-1.9
3,807,939	+		LRK54_RS17420	0.67	+2.0
3,807,940	-		LRK54_RS17420	0.67	-0.7
3,807,940	-		LRK54_RS17420	0.67	-0.9
3,807,940	-		LRK54_RS17420	0.67	-2.8
3,807,940	-		LRK54_RS17420	0.67	+0.1
3,807,976	+		LRK54_RS17420	0.70	-2.7
3,807,976	+		LRK54_RS17420	0.70	+0.1
3,807,976	+		LRK54_RS17420	0.70	+1.4
3,807,977	-		LRK54_RS17420	0.70	+0.1
3,808,270	-				+0.2
3,808,270	-				+1.6
3,808,446	+				-0.1
3,808,446	+				-1.5
3,808,447	-				+0.0
3,808,490	-				-1.5
3,808,490	-				-0.2