Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14735

Experiment: Planktonic; Day4; SGW; pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Planktonic; Day4; SGW; pH7
3,261,733	-				-0.5
3,261,733	-				-0.5
3,261,741	+				+0.7
3,261,741	+				+2.7
3,261,741	+				-1.7
3,261,741	+				-1.2
3,261,741	+				+0.8
3,261,741	+				+0.4
3,261,741	+				-0.6
3,261,742	-				+0.7
3,261,742	-				-0.7
3,261,743	+				+0.8
3,261,743	+				-1.7
3,261,743	+				+2.0
3,261,743	+				-0.5
3,261,744	-				-0.9
3,261,744	-				-0.5
3,261,753	+				+0.4
3,261,754	-				-0.6
3,261,754	-				+1.5
3,261,896	+				+0.9
3,261,896	+				-1.0
3,261,896	+				+1.8
3,261,897	-				-1.2
3,261,897	-				-0.6
3,261,897	-				-1.1
3,261,897	-				+0.1
3,261,897	-				-1.0
3,261,923	+				+0.5
3,261,924	-				-1.9
3,261,924	-				+0.3
3,261,924	-				+0.5
3,261,924	-				-1.9
3,261,942	+				+0.1
3,261,942	+				-2.2
3,261,942	+				-1.7
3,261,942	+				-2.1
3,261,942	+				+0.2
3,261,942	+				-0.6
3,261,942	+				+1.3
3,261,942	+				-0.2
3,261,943	-				-0.4
3,261,943	-				-1.9
3,261,943	-				-0.3
3,261,943	-				+1.4
3,261,943	-				-3.1
3,261,943	-				-1.0
3,261,943	-				+0.4
3,261,943	-				-0.7
3,261,944	+				-0.3
3,261,944	+				-1.4
3,261,945	-				-0.2
3,261,945	-				-0.4
3,261,945	-				+0.2
3,261,959	+				+0.2
3,261,959	+				-1.4
3,261,959	+				+1.1
3,261,959	+				-1.3
3,261,960	-				-0.1
3,261,960	-				-1.6
3,261,960	-				+2.3
3,262,022	+		LRK54_RS14730	0.13	+0.2
3,262,022	+		LRK54_RS14730	0.13	-0.8
3,262,022	+		LRK54_RS14730	0.13	-0.9
3,262,023	+		LRK54_RS14730	0.14	+2.0
3,262,023	-		LRK54_RS14730	0.14	-1.1
3,262,023	-		LRK54_RS14730	0.14	-0.5
3,262,023	-		LRK54_RS14730	0.14	+0.0
3,262,023	-		LRK54_RS14730	0.14	-0.3
3,262,023	-		LRK54_RS14730	0.14	-0.6
3,262,034	+		LRK54_RS14730	0.15	-1.4
3,262,034	+		LRK54_RS14730	0.15	-0.2
3,262,034	+		LRK54_RS14730	0.15	-1.3
3,262,034	+		LRK54_RS14730	0.15	+0.1
3,262,034	+		LRK54_RS14730	0.15	+0.1
3,262,034	+		LRK54_RS14730	0.15	-0.1
3,262,034	+		LRK54_RS14730	0.15	-1.3
3,262,035	-		LRK54_RS14730	0.15	-0.7
3,262,035	-		LRK54_RS14730	0.15	+1.7
3,262,035	-		LRK54_RS14730	0.15	-0.6
3,262,035	-		LRK54_RS14730	0.15	+3.5
3,262,035	-		LRK54_RS14730	0.15	+1.7
3,262,035	-		LRK54_RS14730	0.15	+3.0
3,262,035	-		LRK54_RS14730	0.15	-1.8
3,262,035	-		LRK54_RS14730	0.15	-3.0
3,262,035	-		LRK54_RS14730	0.15	+0.3
3,262,043	+		LRK54_RS14730	0.17	-2.1
3,262,105	-		LRK54_RS14730	0.26	+1.6
3,262,106	+		LRK54_RS14730	0.26	+1.5
3,262,107	-		LRK54_RS14730	0.26	+1.3
3,262,240	+		LRK54_RS14730	0.46	-0.9
3,262,240	+		LRK54_RS14730	0.46	-1.5
3,262,240	+		LRK54_RS14730	0.46	-1.5
3,262,240	+		LRK54_RS14730	0.46	+2.4
3,262,240	+		LRK54_RS14730	0.46	-0.2
3,262,241	-		LRK54_RS14730	0.46	-0.3
3,262,241	-		LRK54_RS14730	0.46	-0.2
3,262,346	+		LRK54_RS14730	0.61	-0.4
3,262,346	+		LRK54_RS14730	0.61	+1.7
3,262,346	+		LRK54_RS14730	0.61	+1.2
3,262,346	+		LRK54_RS14730	0.61	-0.9
3,262,346	+		LRK54_RS14730	0.61	+0.8
3,262,347	-		LRK54_RS14730	0.61	-1.7
3,262,347	-		LRK54_RS14730	0.61	-2.2
3,262,347	-		LRK54_RS14730	0.61	+1.4
3,262,347	-		LRK54_RS14730	0.61	+1.3
3,262,347	-		LRK54_RS14730	0.61	-1.0
3,262,347	-		LRK54_RS14730	0.61	+2.0
3,262,347	-		LRK54_RS14730	0.61	+0.8
3,262,427	+		LRK54_RS14730	0.73	-1.5
3,262,427	+		LRK54_RS14730	0.73	+2.4
3,262,427	+		LRK54_RS14730	0.73	-1.3
3,262,427	+		LRK54_RS14730	0.73	+0.8
3,262,428	-		LRK54_RS14730	0.73	+3.0
3,262,428	-		LRK54_RS14730	0.73	-1.7
3,262,428	-		LRK54_RS14730	0.73	+1.0
3,262,428	-		LRK54_RS14730	0.73	+0.3
3,262,428	-		LRK54_RS14730	0.73	+0.7
3,262,428	-		LRK54_RS14730	0.73	-1.7
3,262,428	-		LRK54_RS14730	0.73	+0.4
3,262,469	+		LRK54_RS14730	0.79	-0.6
3,262,469	+		LRK54_RS14730	0.79	+0.8
3,262,469	+		LRK54_RS14730	0.79	+0.3
3,262,469	+		LRK54_RS14730	0.79	-0.1
3,262,470	-		LRK54_RS14730	0.79	-0.9
3,262,470	-		LRK54_RS14730	0.79	-0.2
3,262,470	-		LRK54_RS14730	0.79	-2.3
3,262,470	-		LRK54_RS14730	0.79	-0.7
3,262,470	-		LRK54_RS14730	0.79	+0.0
3,262,470	-		LRK54_RS14730	0.79	+0.3
3,262,470	-		LRK54_RS14730	0.79	-1.1
3,262,702	+				-0.7
3,262,703	-				-1.8
3,263,203	+		LRK54_RS14735	0.59	+0.4
3,263,203	+		LRK54_RS14735	0.59	-0.4
3,263,204	-		LRK54_RS14735	0.59	+0.8
3,263,204	-		LRK54_RS14735	0.59	+1.0
3,263,204	-		LRK54_RS14735	0.59	+0.9
3,263,204	-		LRK54_RS14735	0.59	-0.5
3,263,204	-		LRK54_RS14735	0.59	-1.0
3,263,472	+		LRK54_RS14735	0.86	+0.7
3,263,472	+		LRK54_RS14735	0.86	-0.2
3,263,472	+		LRK54_RS14735	0.86	+1.4
3,263,472	+		LRK54_RS14735	0.86	-1.4
3,263,473	-		LRK54_RS14735	0.86	+1.3
3,263,473	-		LRK54_RS14735	0.86	-2.1
3,263,473	-		LRK54_RS14735	0.86	-3.5
3,263,473	-		LRK54_RS14735	0.86	-0.6
3,263,473	-		LRK54_RS14735	0.86	-1.6
3,263,473	-		LRK54_RS14735	0.86	+0.3
3,263,473	-		LRK54_RS14735	0.86	-2.9
3,263,473	-		LRK54_RS14735	0.86	-1.3
3,263,473	-		LRK54_RS14735	0.86	-0.3
3,263,473	-		LRK54_RS14735	0.86	-2.0
3,263,474	+		LRK54_RS14735	0.86	-0.2
3,263,474	+		LRK54_RS14735	0.86	-2.6
3,263,474	+		LRK54_RS14735	0.86	-0.9
3,263,474	+		LRK54_RS14735	0.86	-0.9
3,263,474	+		LRK54_RS14735	0.86	-2.3
3,263,474	+		LRK54_RS14735	0.86	-1.5
3,263,474	+		LRK54_RS14735	0.86	+1.1
3,263,474	+		LRK54_RS14735	0.86	-0.3
3,263,474	+		LRK54_RS14735	0.86	+0.7
3,263,475	-		LRK54_RS14735	0.86	+0.7
3,263,475	-		LRK54_RS14735	0.86	+0.8
3,263,475	-		LRK54_RS14735	0.86	+0.8
3,263,475	-		LRK54_RS14735	0.86	-1.5
3,263,475	-		LRK54_RS14735	0.86	+0.1
3,263,475	-		LRK54_RS14735	0.86	+0.2
3,263,475	-		LRK54_RS14735	0.86	-0.2
3,263,584	+				-0.2
3,263,649	+				+1.7
3,263,649	+				+0.6
3,263,649	+				-1.5
3,263,649	+				-1.2
3,263,649	+				+0.8
3,263,650	-				+0.4
3,263,650	-				+0.2
3,263,650	-				-1.8
3,263,650	-				-0.7
3,263,650	-				-2.3
3,263,677	+				-0.5
3,263,677	+				-0.7
3,263,677	+				-0.4
3,263,677	+				+1.1
3,263,677	+				+1.2
3,263,677	+				-1.9
3,263,677	+				-1.9
3,263,677	+				-0.8
3,263,677	+				+1.0
3,263,678	-				-1.4
3,263,678	-				+1.1
3,263,678	-				+1.4
3,263,678	-				-1.4
3,263,678	-				-0.5
3,263,678	-				-0.7
3,263,678	-				-0.4
3,263,678	-				-1.6
3,263,678	-				-1.0
3,263,678	-				+0.2
3,263,678	-				-0.5
3,263,678	-				-0.2
3,263,728	-				-1.7
3,263,728	-				+0.0
3,263,728	-				-0.1
3,263,838	+		LRK54_RS14740	0.25	+0.0
3,263,838	+		LRK54_RS14740	0.25	+2.0
3,263,970	+		LRK54_RS14740	0.52	-0.5
3,263,970	+		LRK54_RS14740	0.52	-0.5
3,263,970	+		LRK54_RS14740	0.52	-1.5
3,263,971	-		LRK54_RS14740	0.53	-0.6
3,263,971	-		LRK54_RS14740	0.53	+0.3
3,263,971	-		LRK54_RS14740	0.53	+1.4
3,263,971	-		LRK54_RS14740	0.53	-0.2
3,264,033	+		LRK54_RS14740	0.65	-0.1
3,264,033	+		LRK54_RS14740	0.65	+0.1
3,264,033	+		LRK54_RS14740	0.65	-0.6
3,264,033	+		LRK54_RS14740	0.65	+0.4
3,264,033	+		LRK54_RS14740	0.65	-0.7
3,264,033	+		LRK54_RS14740	0.65	+0.2
3,264,033	+		LRK54_RS14740	0.65	+3.4
3,264,033	+		LRK54_RS14740	0.65	+0.8
3,264,033	+		LRK54_RS14740	0.65	-0.7
3,264,034	-		LRK54_RS14740	0.66	+0.3
3,264,034	-		LRK54_RS14740	0.66	+0.4
3,264,034	-		LRK54_RS14740	0.66	-0.5
3,264,034	-		LRK54_RS14740	0.66	-1.3
3,264,034	-		LRK54_RS14740	0.66	+0.5
3,264,034	-		LRK54_RS14740	0.66	-1.4
3,264,034	-		LRK54_RS14740	0.66	-1.4
3,264,034	-		LRK54_RS14740	0.66	+0.8
3,264,034	-		LRK54_RS14740	0.66	-1.4
3,264,034	-		LRK54_RS14740	0.66	-0.7
3,264,034	-		LRK54_RS14740	0.66	-0.6
3,264,138	+		LRK54_RS14740	0.87	-2.1
3,264,138	+		LRK54_RS14740	0.87	-3.1
3,264,138	+		LRK54_RS14740	0.87	-1.5
3,264,138	+		LRK54_RS14740	0.87	+1.0
3,264,138	+		LRK54_RS14740	0.87	-2.6
3,264,138	+		LRK54_RS14740	0.87	+1.0
3,264,138	+		LRK54_RS14740	0.87	-2.3
3,264,138	+		LRK54_RS14740	0.87	+0.5
3,264,139	-		LRK54_RS14740	0.87	-2.2
3,264,139	-		LRK54_RS14740	0.87	-0.2
3,264,139	-		LRK54_RS14740	0.87	-2.3
3,264,139	-		LRK54_RS14740	0.87	+1.4
3,264,139	-		LRK54_RS14740	0.87	+0.5
3,264,139	-		LRK54_RS14740	0.87	-1.6
3,264,139	-		LRK54_RS14740	0.87	+0.5
3,264,177	-				-1.5
3,264,334	+				-1.1
3,264,334	+				-0.8
3,264,334	+				+0.4
3,264,334	+				-1.4
3,264,334	+				+0.2
3,264,334	+				+0.7
3,264,334	+				+1.5
3,264,334	+				-1.1
3,264,334	+				+0.3
3,264,334	+				+0.0
3,264,335	-				-0.3
3,264,335	-				+0.3
3,264,335	-				+0.7
3,264,386	+				-1.6
3,264,386	+				-0.9
3,264,386	+				-0.8
3,264,386	+				-0.8
3,264,386	+				-0.2
3,264,386	+				-0.6
3,264,386	+				+0.4
3,264,386	+				-1.4
3,264,386	+				-2.1
3,264,386	+				-1.1
3,264,387	-				-1.8
3,264,387	-				-0.6
3,264,387	-				-0.6
3,264,387	-				+2.3
3,264,387	-				+0.4
3,264,387	-				+0.0
3,264,387	-				+0.3
3,264,387	-				-0.4
3,264,449	+		LRK54_RS14745	0.20	-2.5
3,264,449	+		LRK54_RS14745	0.20	+0.8
3,264,449	+		LRK54_RS14745	0.20	+2.2
3,264,449	+		LRK54_RS14745	0.20	+0.1
3,264,449	+		LRK54_RS14745	0.20	-1.8
3,264,449	+		LRK54_RS14745	0.20	-1.7
3,264,449	+		LRK54_RS14745	0.20	-1.2
3,264,449	+		LRK54_RS14745	0.20	-1.4
3,264,449	+		LRK54_RS14745	0.20	-1.3
3,264,449	+		LRK54_RS14745	0.20	-0.2
3,264,450	-		LRK54_RS14745	0.21	-1.5
3,264,450	-		LRK54_RS14745	0.21	+0.2
3,264,450	-		LRK54_RS14745	0.21	+0.3
3,264,450	-		LRK54_RS14745	0.21	-1.7
3,264,450	-		LRK54_RS14745	0.21	-1.1
3,264,450	-		LRK54_RS14745	0.21	+0.1
3,264,450	-		LRK54_RS14745	0.21	-0.4
3,264,450	-		LRK54_RS14745	0.21	-1.5
3,264,450	-		LRK54_RS14745	0.21	-1.5
3,264,450	-		LRK54_RS14745	0.21	-1.0
3,264,450	-		LRK54_RS14745	0.21	+0.1
3,264,450	-		LRK54_RS14745	0.21	+0.2
3,264,450	-		LRK54_RS14745	0.21	-2.5
3,264,450	-		LRK54_RS14745	0.21	-0.1
3,264,450	-		LRK54_RS14745	0.21	+0.2
3,264,452	-		LRK54_RS14745	0.21	-1.6
3,264,551	+		LRK54_RS14745	0.42	-2.3
3,264,551	+		LRK54_RS14745	0.42	-1.7