Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09435

Experiment: Planktonic; Day4; SGW; pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Planktonic; Day4; SGW; pH7
2,070,481	+		LRK54_RS09430	0.64	+2.1
2,070,481	+		LRK54_RS09430	0.64	-0.1
2,070,481	+		LRK54_RS09430	0.64	+0.2
2,070,482	-		LRK54_RS09430	0.64	-1.7
2,070,482	-		LRK54_RS09430	0.64	-1.9
2,070,482	-		LRK54_RS09430	0.64	+1.9
2,070,482	-		LRK54_RS09430	0.64	-1.2
2,070,482	-		LRK54_RS09430	0.64	-1.3
2,070,482	-		LRK54_RS09430	0.64	+1.1
2,070,484	+		LRK54_RS09430	0.64	-1.2
2,070,484	+		LRK54_RS09430	0.64	-1.2
2,070,484	+		LRK54_RS09430	0.64	+1.2
2,070,484	+		LRK54_RS09430	0.64	-0.2
2,070,485	-		LRK54_RS09430	0.64	-0.3
2,070,485	-		LRK54_RS09430	0.64	-2.2
2,070,485	-		LRK54_RS09430	0.64	+1.2
2,070,485	-		LRK54_RS09430	0.64	+0.5
2,070,485	-		LRK54_RS09430	0.64	-2.4
2,070,485	-		LRK54_RS09430	0.64	-0.9
2,070,485	-		LRK54_RS09430	0.64	-2.1
2,070,485	-		LRK54_RS09430	0.64	-0.3
2,070,485	-		LRK54_RS09430	0.64	+0.7
2,070,485	-		LRK54_RS09430	0.64	-0.2
2,070,485	-		LRK54_RS09430	0.64	-0.5
2,070,586	+		LRK54_RS09430	0.69	-2.2
2,070,610	+		LRK54_RS09430	0.70	+0.8
2,070,610	+		LRK54_RS09430	0.70	+0.3
2,070,793	+		LRK54_RS09430	0.78	-3.0
2,070,793	+		LRK54_RS09430	0.78	-0.7
2,070,793	+		LRK54_RS09430	0.78	-0.4
2,070,793	+		LRK54_RS09430	0.78	-1.1
2,070,793	+		LRK54_RS09430	0.78	-1.5
2,070,793	+		LRK54_RS09430	0.78	+0.7
2,070,793	+		LRK54_RS09430	0.78	+1.7
2,070,793	+		LRK54_RS09430	0.78	-0.8
2,070,793	+		LRK54_RS09430	0.78	+0.9
2,070,794	-		LRK54_RS09430	0.79	-0.5
2,070,794	-		LRK54_RS09430	0.79	+0.1
2,070,794	-		LRK54_RS09430	0.79	-0.6
2,070,794	-		LRK54_RS09430	0.79	+0.8
2,070,794	-		LRK54_RS09430	0.79	-0.3
2,070,794	-		LRK54_RS09430	0.79	+0.2
2,070,794	-		LRK54_RS09430	0.79	+0.0
2,070,796	+		LRK54_RS09430	0.79	+0.4
2,070,796	+		LRK54_RS09430	0.79	-0.3
2,070,796	+		LRK54_RS09430	0.79	+1.7
2,070,796	+		LRK54_RS09430	0.79	-0.4
2,070,796	+		LRK54_RS09430	0.79	-0.9
2,070,797	-		LRK54_RS09430	0.79	-2.4
2,070,797	-		LRK54_RS09430	0.79	+1.5
2,070,797	-		LRK54_RS09430	0.79	+0.4
2,070,797	-		LRK54_RS09430	0.79	+0.4
2,070,797	-		LRK54_RS09430	0.79	+0.3
2,070,797	-		LRK54_RS09430	0.79	-1.5
2,070,797	-		LRK54_RS09430	0.79	-0.4
2,070,961	+		LRK54_RS09430	0.86	-0.3
2,070,961	+		LRK54_RS09430	0.86	+2.1
2,070,961	+		LRK54_RS09430	0.86	-1.4
2,070,961	+		LRK54_RS09430	0.86	+0.8
2,070,961	+		LRK54_RS09430	0.86	-1.3
2,070,961	+		LRK54_RS09430	0.86	+1.5
2,070,961	+		LRK54_RS09430	0.86	-0.5
2,070,961	+		LRK54_RS09430	0.86	-1.9
2,070,962	-		LRK54_RS09430	0.86	-2.4
2,070,962	-		LRK54_RS09430	0.86	-0.9
2,070,962	-		LRK54_RS09430	0.86	-0.3
2,070,979	+		LRK54_RS09430	0.87	-1.7
2,070,979	+		LRK54_RS09430	0.87	+1.1
2,070,980	-		LRK54_RS09430	0.87	-0.3
2,070,980	-		LRK54_RS09430	0.87	+1.3
2,070,994	-		LRK54_RS09430	0.88	-1.6
2,070,995	+		LRK54_RS09430	0.88	+0.9
2,070,996	-		LRK54_RS09430	0.88	-2.0
2,070,996	-		LRK54_RS09430	0.88	-1.0
2,070,996	-		LRK54_RS09430	0.88	-1.1
2,071,016	+		LRK54_RS09430	0.89	+0.8
2,071,016	+		LRK54_RS09430	0.89	+1.4
2,071,016	+		LRK54_RS09430	0.89	+2.2
2,071,016	+		LRK54_RS09430	0.89	-0.8
2,071,016	+		LRK54_RS09430	0.89	-0.6
2,071,016	+		LRK54_RS09430	0.89	+0.9
2,071,016	+		LRK54_RS09430	0.89	+0.1
2,071,016	+		LRK54_RS09430	0.89	+1.6
2,071,017	-		LRK54_RS09430	0.89	-2.7
2,071,017	-		LRK54_RS09430	0.89	+0.8
2,071,017	-		LRK54_RS09430	0.89	+0.8
2,071,018	+		LRK54_RS09430	0.89	+0.4
2,071,018	+		LRK54_RS09430	0.89	-0.8
2,071,018	+		LRK54_RS09430	0.89	+3.3
2,071,019	-		LRK54_RS09430	0.89	-1.4
2,071,019	-		LRK54_RS09430	0.89	+0.6
2,071,019	-		LRK54_RS09430	0.89	-0.9
2,071,075	+				-1.8
2,071,075	+				-2.6
2,071,076	-				+0.6
2,071,150	+				-1.5
2,071,150	+				-0.5
2,071,150	+				-2.6
2,071,150	+				-0.3
2,071,150	+				-1.6
2,071,150	+				-1.6
2,071,150	+				+0.7
2,071,150	+				+0.2
2,071,150	+				+0.0
2,071,150	+				-0.1
2,071,150	+				-1.9
2,071,150	+				-2.5
2,071,150	+				-0.6
2,071,151	-				+0.5
2,071,151	-				-0.6
2,071,151	-				-0.1
2,071,151	-				+0.4
2,071,151	-				-2.3
2,071,151	-				-3.5
2,071,151	-				+2.7
2,071,151	-				+4.1
2,071,151	-				-1.5
2,071,151	-				-0.1
2,071,151	-				+0.7
2,071,255	+				+0.7
2,071,256	-				+1.1
2,071,256	-				+0.4
2,071,256	-				-0.8
2,071,256	-				-0.7
2,071,256	-				-0.5
2,071,256	-				-2.6
2,071,263	+				-1.4
2,071,263	+				-0.6
2,071,333	+				+0.4
2,071,334	-				+0.7
2,071,342	+				-0.5
2,071,342	+				-2.1
2,071,342	+				+1.1
2,071,342	+				-0.4
2,071,342	+				-1.6
2,071,342	+				-1.0
2,071,342	+				-0.7
2,071,342	+				+1.5
2,071,342	+				+0.5
2,071,342	+				-0.9
2,071,342	+				-0.8
2,071,342	+				-0.8
2,071,342	+				+0.8
2,071,342	+				-0.8
2,071,342	+				-3.1
2,071,342	+				-0.7
2,071,342	+				-0.1
2,071,343	-				+0.8
2,071,343	-				-0.8
2,071,343	-				+2.7
2,071,343	-				-0.9
2,071,343	-				+0.6
2,071,343	-				+0.1
2,071,343	-				-0.1
2,071,343	-				+0.5
2,071,343	-				-0.5
2,071,343	-				-2.6
2,071,343	-				+0.1
2,071,344	+				-1.9
2,071,344	+				+0.9
2,071,344	+				+0.7
2,071,344	+				+0.7
2,071,344	+				+0.0
2,071,344	+				+1.8
2,071,344	+				+0.3
2,071,344	+				-2.1
2,071,344	+				+0.6
2,071,344	+				-1.3
2,071,344	+				+1.9
2,071,344	+				-1.0
2,071,344	+				+2.2
2,071,345	-				-2.7
2,071,345	-				-0.7
2,071,345	-				-1.1
2,071,345	-				+0.0
2,071,345	-				+2.7
2,071,345	-				+1.7
2,071,345	-				-1.0
2,071,345	-				+3.3
2,071,345	-				+0.4
2,071,346	-				-2.2
2,071,346	-				+0.1
2,071,349	+				-0.2
2,071,349	+				-2.3
2,071,349	+				-2.7
2,071,350	-				-1.2
2,071,350	-				+2.3
2,071,350	-				-0.3
2,071,350	-				-0.1
2,071,362	+				+0.5
2,071,404	+				+1.2
2,071,404	+				-1.6
2,071,404	+				-2.7
2,071,404	+				-2.6
2,071,404	+				-0.9
2,071,404	+				-1.0
2,071,404	+				-1.8
2,071,404	+				-1.3
2,071,404	+				-0.5
2,071,404	+				-1.5
2,071,404	+				-0.3
2,071,405	-				-2.3
2,071,405	-				-1.0
2,071,405	-				-0.9
2,071,405	-				+0.5
2,071,405	-				+1.1
2,071,405	-				+2.7
2,071,405	-				-1.6
2,071,510	+		LRK54_RS09435	0.24	+2.5
2,071,510	+		LRK54_RS09435	0.24	+2.3
2,071,510	+		LRK54_RS09435	0.24	-1.9
2,071,510	+		LRK54_RS09435	0.24	-1.6
2,071,511	-		LRK54_RS09435	0.24	-1.7
2,071,511	-		LRK54_RS09435	0.24	+3.4
2,071,511	-		LRK54_RS09435	0.24	-2.7
2,071,511	-		LRK54_RS09435	0.24	-1.5
2,071,511	-		LRK54_RS09435	0.24	+0.4
2,071,511	-		LRK54_RS09435	0.24	+0.4
2,071,570	+		LRK54_RS09435	0.35	-0.9
2,071,570	+		LRK54_RS09435	0.35	-0.7
2,071,570	+		LRK54_RS09435	0.35	-3.2
2,071,571	-		LRK54_RS09435	0.35	-0.3
2,071,571	-		LRK54_RS09435	0.35	+1.5
2,071,571	-		LRK54_RS09435	0.35	-0.8
2,071,801	+		LRK54_RS09435	0.80	-1.7
2,071,802	-		LRK54_RS09435	0.80	-2.9
2,071,802	-		LRK54_RS09435	0.80	+1.7
2,071,802	-		LRK54_RS09435	0.80	-0.1
2,071,802	-		LRK54_RS09435	0.80	+4.3
2,071,802	-		LRK54_RS09435	0.80	-2.8
2,071,802	-		LRK54_RS09435	0.80	+0.4
2,071,852	+		LRK54_RS09435	0.90	-0.9
2,071,852	+		LRK54_RS09435	0.90	-1.7
2,071,852	+		LRK54_RS09435	0.90	-2.1
2,071,852	+		LRK54_RS09435	0.90	-0.1
2,071,852	+		LRK54_RS09435	0.90	+0.9
2,071,853	-		LRK54_RS09435	0.90	+0.2
2,071,897	+				-1.2
2,071,897	+				-1.7
2,071,897	+				+1.7
2,071,903	+				-0.6
2,071,968	+				-0.4
2,071,968	+				+1.4
2,071,969	-				+0.1
2,071,969	-				+0.7
2,071,969	-				-0.8
2,071,969	-				+3.4
2,072,058	+		LRK54_RS09440	0.13	-2.2
2,072,058	+		LRK54_RS09440	0.13	+0.0
2,072,058	+		LRK54_RS09440	0.13	-0.2
2,072,058	+		LRK54_RS09440	0.13	-1.2
2,072,058	+		LRK54_RS09440	0.13	+1.6
2,072,058	+		LRK54_RS09440	0.13	-0.7
2,072,059	-		LRK54_RS09440	0.13	+0.7
2,072,059	-		LRK54_RS09440	0.13	-0.4
2,072,059	-		LRK54_RS09440	0.13	+1.5
2,072,059	-		LRK54_RS09440	0.13	+0.8
2,072,220	+		LRK54_RS09440	0.27	+0.9
2,072,221	-		LRK54_RS09440	0.27	+0.2
2,072,221	-		LRK54_RS09440	0.27	+1.2
2,072,373	+		LRK54_RS09440	0.40	+0.3
2,072,373	+		LRK54_RS09440	0.40	-0.4
2,072,373	+		LRK54_RS09440	0.40	+1.2
2,072,373	+		LRK54_RS09440	0.40	-1.7
2,072,373	+		LRK54_RS09440	0.40	-1.2
2,072,373	+		LRK54_RS09440	0.40	+1.6
2,072,373	+		LRK54_RS09440	0.40	-0.8
2,072,373	+		LRK54_RS09440	0.40	-2.2
2,072,373	+		LRK54_RS09440	0.40	+0.5
2,072,373	+		LRK54_RS09440	0.40	-0.4
2,072,374	-		LRK54_RS09440	0.40	+0.7
2,072,374	-		LRK54_RS09440	0.40	+0.8
2,072,374	-		LRK54_RS09440	0.40	+0.5
2,072,374	-		LRK54_RS09440	0.40	+1.1
2,072,374	-		LRK54_RS09440	0.40	+0.0
2,072,374	-		LRK54_RS09440	0.40	-1.1
2,072,374	-		LRK54_RS09440	0.40	-1.0
2,072,374	-		LRK54_RS09440	0.40	-1.0
2,072,509	-		LRK54_RS09440	0.51	+1.7
2,072,509	-		LRK54_RS09440	0.51	-1.7
2,072,509	-		LRK54_RS09440	0.51	+2.4
2,072,598	+		LRK54_RS09440	0.59	+0.7
2,072,598	+		LRK54_RS09440	0.59	+0.5
2,072,599	-		LRK54_RS09440	0.59	-0.5
2,072,759	+		LRK54_RS09440	0.73	-1.8
2,072,759	+		LRK54_RS09440	0.73	+2.3
2,072,759	+		LRK54_RS09440	0.73	-2.3
2,072,760	-		LRK54_RS09440	0.73	-0.2
2,072,760	-		LRK54_RS09440	0.73	+0.1
2,072,760	-		LRK54_RS09440	0.73	-0.2
2,072,760	-		LRK54_RS09440	0.73	-0.3
2,072,760	-		LRK54_RS09440	0.73	-0.5
2,072,760	-		LRK54_RS09440	0.73	-0.1
2,072,886	+		LRK54_RS09440	0.84	-3.3
2,072,887	-		LRK54_RS09440	0.84	+0.7