Experiment: Planktonic; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01190 and LRK54_RS01195 are separated by 145 nucleotides LRK54_RS01195 and LRK54_RS01200 are separated by 161 nucleotides LRK54_RS01200 and LRK54_RS01205 are separated by 85 nucleotides
LRK54_RS01190: LRK54_RS01190 - ACP S-malonyltransferase, at 264,721 to 265,668
_RS01190
LRK54_RS01195: LRK54_RS01195 - ketoacyl-ACP synthase III, at 265,814 to 266,788
_RS01195
LRK54_RS01200: LRK54_RS01200 - 50S ribosomal protein L32, at 266,950 to 267,144
_RS01200
LRK54_RS01205: LRK54_RS01205 - YceD family protein, at 267,230 to 267,703
_RS01205
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 265.723 kb on + strand at 265.724 kb on - strand at 265.724 kb on - strand at 265.724 kb on - strand at 265.724 kb on - strand at 265.724 kb on - strand at 265.733 kb on + strand at 265.733 kb on + strand at 265.733 kb on + strand at 265.733 kb on + strand at 265.733 kb on + strand at 265.733 kb on + strand at 265.733 kb on + strand at 265.733 kb on + strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 265.734 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.807 kb on - strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.860 kb on + strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.861 kb on - strand at 266.868 kb on + strand at 266.868 kb on + strand at 266.868 kb on + strand at 266.868 kb on + strand at 266.868 kb on + strand at 266.868 kb on + strand at 266.868 kb on + strand at 266.868 kb on + strand at 266.868 kb on + strand at 266.869 kb on - strand at 266.869 kb on - strand at 266.869 kb on - strand at 266.869 kb on - strand at 266.869 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.232 kb on - strand at 267.743 kb on - strand at 267.743 kb on - strand at 267.743 kb on - strand at 267.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day4; SGW; pH7 remove 265,723 + +6.4 265,724 - -0.9 265,724 - +0.8 265,724 - +1.1 265,724 - +0.0 265,724 - +1.3 265,733 + -0.3 265,733 + -1.5 265,733 + -0.9 265,733 + +0.9 265,733 + +1.1 265,733 + -1.0 265,733 + +1.1 265,733 + +0.4 265,734 - -1.7 265,734 - -0.2 265,734 - -1.3 265,734 - -0.9 265,734 - -0.5 265,734 - -0.3 265,734 - +0.0 265,734 - +1.5 265,734 - +0.1 265,734 - -2.2 265,734 - +2.0 265,734 - -1.6 265,734 - +0.6 265,734 - +0.1 265,734 - -0.6 265,734 - -0.3 265,734 - +1.2 265,734 - -3.6 265,734 - -0.6 265,734 - -1.4 265,734 - -0.6 265,734 - -0.8 266,807 - -0.7 266,807 - +1.8 266,807 - -0.6 266,807 - +0.6 266,807 - -0.1 266,807 - -0.1 266,807 - -1.4 266,807 - +0.9 266,807 - +1.1 266,807 - +0.3 266,860 + +1.3 266,860 + +0.3 266,860 + +0.6 266,860 + -0.5 266,860 + -1.6 266,860 + -2.3 266,860 + -2.3 266,860 + -0.8 266,860 + -0.7 266,860 + -1.9 266,860 + -2.0 266,860 + +0.9 266,860 + -1.9 266,860 + -1.6 266,860 + -0.8 266,860 + +0.5 266,860 + -1.6 266,860 + -1.5 266,860 + -1.0 266,860 + -0.0 266,860 + -1.5 266,860 + -1.6 266,860 + -0.7 266,860 + -1.2 266,860 + +0.1 266,860 + +1.1 266,860 + -1.5 266,860 + +0.2 266,860 + -0.2 266,860 + +1.5 266,860 + -0.3 266,860 + -0.1 266,860 + -0.7 266,860 + -1.1 266,860 + -1.8 266,860 + -2.3 266,860 + -1.2 266,860 + +1.1 266,860 + +0.9 266,860 + +0.2 266,860 + -0.3 266,860 + -0.9 266,860 + -0.1 266,861 - -0.8 266,861 - +2.1 266,861 - +1.9 266,861 - -0.9 266,861 - +1.5 266,861 - -0.1 266,861 - +1.1 266,861 - -1.9 266,861 - -0.0 266,861 - -2.4 266,861 - +1.3 266,861 - -1.4 266,861 - +0.2 266,861 - -0.7 266,861 - -0.8 266,861 - +0.4 266,861 - +0.1 266,861 - +2.8 266,861 - -2.3 266,861 - +1.1 266,861 - -2.1 266,861 - -0.5 266,861 - -0.6 266,861 - -0.1 266,861 - +4.1 266,861 - -1.2 266,861 - +1.8 266,861 - -0.7 266,861 - +1.0 266,861 - +3.1 266,861 - -0.7 266,861 - -0.8 266,861 - +0.5 266,861 - -0.8 266,868 + +0.9 266,868 + +1.1 266,868 + +1.5 266,868 + -0.6 266,868 + -1.7 266,868 + +0.9 266,868 + +1.6 266,868 + -0.9 266,868 + -3.3 266,869 - +1.5 266,869 - -0.1 266,869 - -1.8 266,869 - -2.3 266,869 - +0.8 267,232 - -0.3 267,232 - -0.8 267,232 - -1.3 267,232 - +0.1 267,232 - -1.4 267,232 - -2.1 267,232 - -3.7 267,232 - -3.1 267,232 - -0.0 267,232 - -0.7 267,232 - -0.2 267,232 - -0.8 267,232 - -2.1 267,743 - -1.2 267,743 - -0.2 267,743 - +0.5 267,743 - +1.5
Or see this region's nucleotide sequence