Experiment: H2 N-free with 10mM L-tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03380 and MMP_RS03385 are separated by 4 nucleotides MMP_RS03385 and MMP_RS03390 are separated by 16 nucleotides
MMP_RS03380: MMP_RS03380 - DUF354 domain-containing protein, at 634,967 to 635,980
_RS03380
MMP_RS03385: MMP_RS03385 - cation diffusion facilitator family transporter, at 635,985 to 636,860
_RS03385
MMP_RS03390: MMP_RS03390 - malate dehydrogenase, at 636,877 to 637,821
_RS03390
Position (kb) 635
636
637 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 635.869 kb on + strand at 635.973 kb on - strand at 635.978 kb on - strand at 636.014 kb on - strand at 636.290 kb on - strand, within MMP_RS03385 at 636.837 kb on + strand at 636.883 kb on + strand at 636.914 kb on + strand at 637.060 kb on + strand, within MMP_RS03390 at 637.095 kb on - strand, within MMP_RS03390 at 637.102 kb on - strand, within MMP_RS03390 at 637.156 kb on - strand, within MMP_RS03390 at 637.352 kb on + strand, within MMP_RS03390 at 637.433 kb on - strand, within MMP_RS03390 at 637.441 kb on - strand, within MMP_RS03390 at 637.469 kb on + strand, within MMP_RS03390 at 637.476 kb on - strand, within MMP_RS03390 at 637.502 kb on + strand, within MMP_RS03390 at 637.582 kb on + strand, within MMP_RS03390 at 637.586 kb on + strand, within MMP_RS03390 at 637.594 kb on + strand, within MMP_RS03390 at 637.821 kb on - strand at 637.836 kb on - strand at 637.837 kb on + strand at 637.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-tyrosine remove 635,869 + -0.1 635,973 - +3.7 635,978 - +1.3 636,014 - -2.1 636,290 - MMP_RS03385 0.35 -0.8 636,837 + +2.2 636,883 + -0.2 636,914 + +4.4 637,060 + MMP_RS03390 0.19 +1.6 637,095 - MMP_RS03390 0.23 +5.0 637,102 - MMP_RS03390 0.24 +2.7 637,156 - MMP_RS03390 0.30 +2.5 637,352 + MMP_RS03390 0.50 -0.1 637,433 - MMP_RS03390 0.59 -0.3 637,441 - MMP_RS03390 0.60 -0.8 637,469 + MMP_RS03390 0.63 +3.7 637,476 - MMP_RS03390 0.63 -0.9 637,502 + MMP_RS03390 0.66 -1.0 637,582 + MMP_RS03390 0.75 +0.4 637,586 + MMP_RS03390 0.75 -2.0 637,594 + MMP_RS03390 0.76 +2.6 637,821 - -2.1 637,836 - +2.8 637,837 + +2.6 637,841 + +2.3
Or see this region's nucleotide sequence