Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00765

Experiment: H2 N-free with 10mM L-tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00755 and MMP_RS00760 are separated by 49 nucleotidesMMP_RS00760 and MMP_RS00765 are separated by 72 nucleotidesMMP_RS00765 and MMP_RS00770 are separated by 49 nucleotidesMMP_RS00770 and MMP_RS00775 are separated by 270 nucleotides MMP_RS00755: MMP_RS00755 - tyrosine decarboxylase MfnA, at 137,305 to 138,459 _RS00755 MMP_RS00760: MMP_RS00760 - branched-chain-amino-acid transaminase, at 138,509 to 139,372 _RS00760 MMP_RS00765: MMP_RS00765 - IMP dehydrogenase, at 139,445 to 140,947 _RS00765 MMP_RS00770: MMP_RS00770 - hypothetical protein, at 140,997 to 141,341 _RS00770 MMP_RS00775: MMP_RS00775 - threonine synthase, at 141,612 to 142,826 _RS00775 Position (kb) 139 140 141Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 138.458 kb on + strandat 138.464 kb on - strandat 138.564 kb on - strandat 138.660 kb on - strand, within MMP_RS00760at 138.753 kb on - strand, within MMP_RS00760at 138.753 kb on - strand, within MMP_RS00760at 138.754 kb on + strand, within MMP_RS00760at 138.764 kb on - strand, within MMP_RS00760at 138.765 kb on + strand, within MMP_RS00760at 138.768 kb on - strand, within MMP_RS00760at 138.769 kb on + strand, within MMP_RS00760at 138.769 kb on + strand, within MMP_RS00760at 138.895 kb on + strand, within MMP_RS00760at 139.062 kb on - strand, within MMP_RS00760at 139.072 kb on - strand, within MMP_RS00760at 139.081 kb on - strand, within MMP_RS00760at 139.082 kb on + strand, within MMP_RS00760at 139.371 kb on + strandat 139.433 kb on - strandat 139.434 kb on + strandat 139.446 kb on - strandat 139.625 kb on - strandat 140.291 kb on + strandat 140.457 kb on + strandat 140.898 kb on - strandat 140.927 kb on - strandat 140.977 kb on - strandat 140.977 kb on - strandat 140.981 kb on - strandat 140.982 kb on + strandat 141.194 kb on - strand, within MMP_RS00770at 141.195 kb on + strand, within MMP_RS00770at 141.226 kb on - strand, within MMP_RS00770at 141.319 kb on - strandat 141.340 kb on + strandat 141.396 kb on - strandat 141.400 kb on - strandat 141.426 kb on - strandat 141.427 kb on + strandat 141.428 kb on - strandat 141.429 kb on + strandat 141.429 kb on + strandat 141.429 kb on + strandat 141.429 kb on + strandat 141.430 kb on - strandat 141.431 kb on + strandat 141.431 kb on + strandat 141.431 kb on + strandat 141.431 kb on + strandat 141.459 kb on - strandat 141.460 kb on + strandat 141.485 kb on + strandat 141.531 kb on + strandat 141.557 kb on + strandat 141.562 kb on - strandat 141.611 kb on - strandat 141.612 kb on + strandat 141.631 kb on - strandat 141.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-tyrosine
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138,458 + +1.0
138,464 - -1.8
138,564 - -0.4
138,660 - MMP_RS00760 0.17 -1.0
138,753 - MMP_RS00760 0.28 +1.7
138,753 - MMP_RS00760 0.28 -0.6
138,754 + MMP_RS00760 0.28 +2.3
138,764 - MMP_RS00760 0.30 -1.6
138,765 + MMP_RS00760 0.30 +0.7
138,768 - MMP_RS00760 0.30 +1.7
138,769 + MMP_RS00760 0.30 +0.5
138,769 + MMP_RS00760 0.30 +2.9
138,895 + MMP_RS00760 0.45 +1.4
139,062 - MMP_RS00760 0.64 +3.0
139,072 - MMP_RS00760 0.65 -0.8
139,081 - MMP_RS00760 0.66 +1.3
139,082 + MMP_RS00760 0.66 +0.6
139,371 + -1.2
139,433 - -0.1
139,434 + -0.2
139,446 - -0.6
139,625 - -1.0
140,291 + -0.4
140,457 + +2.4
140,898 - +0.3
140,927 - -2.4
140,977 - +1.3
140,977 - -2.9
140,981 - -1.1
140,982 + -0.6
141,194 - MMP_RS00770 0.57 -0.8
141,195 + MMP_RS00770 0.57 -0.5
141,226 - MMP_RS00770 0.66 -0.1
141,319 - +0.7
141,340 + +0.8
141,396 - +2.2
141,400 - -0.5
141,426 - +1.5
141,427 + +1.1
141,428 - -0.8
141,429 + -1.3
141,429 + +0.4
141,429 + -0.6
141,429 + -1.4
141,430 - +2.1
141,431 + +2.2
141,431 + -0.6
141,431 + +1.6
141,431 + -1.4
141,459 - -1.1
141,460 + +0.8
141,485 + -0.3
141,531 + -0.0
141,557 + -3.6
141,562 - -0.6
141,611 - -1.1
141,612 + -0.4
141,631 - -2.2
141,787 - -0.2

Or see this region's nucleotide sequence