Experiment: H2 N-free with 10mM L-Cysteine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03735 and MMP_RS03740 overlap by 1 nucleotides MMP_RS03740 and MMP_RS03745 are separated by 10 nucleotides MMP_RS03745 and MMP_RS03750 are separated by 13 nucleotides MMP_RS03750 and MMP_RS03755 are separated by 12 nucleotides
MMP_RS03735: MMP_RS03735 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 706,252 to 707,988
_RS03735
MMP_RS03740: MMP_RS03740 - indolepyruvate oxidoreductase subunit beta, at 707,988 to 708,554
_RS03740
MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863
_RS03745
MMP_RS03750: MMP_RS03750 - ACT domain-containing protein, at 709,877 to 710,302
_RS03750
MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851
_RS03755
Position (kb) 708
709
710 Strain fitness (log2 ratio) -1
0
1 at 707.969 kb on - strand at 707.969 kb on - strand at 707.970 kb on + strand at 707.970 kb on + strand at 707.981 kb on - strand at 708.133 kb on + strand, within MMP_RS03740 at 708.226 kb on + strand, within MMP_RS03740 at 708.263 kb on + strand, within MMP_RS03740 at 708.292 kb on - strand, within MMP_RS03740 at 708.413 kb on + strand, within MMP_RS03740 at 708.553 kb on + strand at 708.582 kb on - strand at 708.624 kb on - strand at 708.646 kb on + strand at 708.656 kb on + strand at 708.750 kb on - strand, within MMP_RS03745 at 708.792 kb on + strand, within MMP_RS03745 at 708.864 kb on + strand, within MMP_RS03745 at 709.115 kb on + strand, within MMP_RS03745 at 709.123 kb on - strand, within MMP_RS03745 at 709.262 kb on - strand, within MMP_RS03745 at 709.262 kb on - strand, within MMP_RS03745 at 709.265 kb on + strand, within MMP_RS03745 at 709.413 kb on + strand, within MMP_RS03745 at 709.416 kb on - strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745 at 709.640 kb on - strand, within MMP_RS03745 at 709.657 kb on + strand, within MMP_RS03745 at 709.796 kb on - strand at 709.797 kb on + strand at 709.927 kb on + strand, within MMP_RS03750 at 710.010 kb on - strand, within MMP_RS03750 at 710.091 kb on - strand, within MMP_RS03750 at 710.159 kb on + strand, within MMP_RS03750 at 710.172 kb on + strand, within MMP_RS03750 at 710.175 kb on - strand, within MMP_RS03750 at 710.175 kb on - strand, within MMP_RS03750 at 710.176 kb on + strand, within MMP_RS03750 at 710.248 kb on + strand, within MMP_RS03750 at 710.301 kb on + strand at 710.326 kb on - strand at 710.375 kb on + strand, within MMP_RS03755 at 710.415 kb on + strand, within MMP_RS03755 at 710.478 kb on + strand, within MMP_RS03755 at 710.483 kb on + strand, within MMP_RS03755 at 710.483 kb on + strand, within MMP_RS03755 at 710.502 kb on - strand, within MMP_RS03755 at 710.502 kb on - strand, within MMP_RS03755 at 710.503 kb on + strand, within MMP_RS03755 at 710.524 kb on - strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.616 kb on + strand, within MMP_RS03755 at 710.636 kb on - strand, within MMP_RS03755 at 710.636 kb on - strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.653 kb on - strand, within MMP_RS03755 at 710.750 kb on + strand, within MMP_RS03755 at 710.767 kb on - strand, within MMP_RS03755 at 710.783 kb on - strand, within MMP_RS03755 at 710.784 kb on + strand, within MMP_RS03755 at 710.818 kb on + strand at 710.831 kb on - strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Cysteine remove 707,969 - +0.0 707,969 - +0.2 707,970 + +0.7 707,970 + -1.0 707,981 - -0.9 708,133 + MMP_RS03740 0.26 +0.1 708,226 + MMP_RS03740 0.42 +0.0 708,263 + MMP_RS03740 0.49 -1.5 708,292 - MMP_RS03740 0.54 +0.1 708,413 + MMP_RS03740 0.75 -0.2 708,553 + -0.2 708,582 - -0.3 708,624 - -0.8 708,646 + -0.5 708,656 + -1.1 708,750 - MMP_RS03745 0.14 -0.9 708,792 + MMP_RS03745 0.17 +0.2 708,864 + MMP_RS03745 0.23 -0.2 709,115 + MMP_RS03745 0.42 -0.6 709,123 - MMP_RS03745 0.43 +0.6 709,262 - MMP_RS03745 0.54 -0.6 709,262 - MMP_RS03745 0.54 -0.0 709,265 + MMP_RS03745 0.54 +0.7 709,413 + MMP_RS03745 0.65 -1.0 709,416 - MMP_RS03745 0.66 -1.4 709,417 + MMP_RS03745 0.66 -0.1 709,417 + MMP_RS03745 0.66 -0.9 709,640 - MMP_RS03745 0.83 +0.3 709,657 + MMP_RS03745 0.84 +0.0 709,796 - -0.1 709,797 + +0.9 709,927 + MMP_RS03750 0.12 +0.8 710,010 - MMP_RS03750 0.31 +0.2 710,091 - MMP_RS03750 0.50 -0.6 710,159 + MMP_RS03750 0.66 -0.6 710,172 + MMP_RS03750 0.69 +0.7 710,175 - MMP_RS03750 0.70 +0.2 710,175 - MMP_RS03750 0.70 -0.1 710,176 + MMP_RS03750 0.70 -0.0 710,248 + MMP_RS03750 0.87 -0.3 710,301 + +0.0 710,326 - -0.7 710,375 + MMP_RS03755 0.11 -0.4 710,415 + MMP_RS03755 0.19 -1.1 710,478 + MMP_RS03755 0.30 -0.1 710,483 + MMP_RS03755 0.31 +0.7 710,483 + MMP_RS03755 0.31 +0.2 710,502 - MMP_RS03755 0.35 +1.3 710,502 - MMP_RS03755 0.35 -0.1 710,503 + MMP_RS03755 0.35 +0.0 710,524 - MMP_RS03755 0.39 +0.0 710,525 + MMP_RS03755 0.39 +0.1 710,525 + MMP_RS03755 0.39 +0.6 710,525 + MMP_RS03755 0.39 +0.5 710,616 + MMP_RS03755 0.56 -0.2 710,636 - MMP_RS03755 0.60 -0.5 710,636 - MMP_RS03755 0.60 +0.6 710,637 + MMP_RS03755 0.60 +0.1 710,637 + MMP_RS03755 0.60 -0.2 710,643 - MMP_RS03755 0.61 -0.4 710,643 - MMP_RS03755 0.61 -0.9 710,643 - MMP_RS03755 0.61 -0.0 710,643 - MMP_RS03755 0.61 +0.6 710,644 + MMP_RS03755 0.61 +0.2 710,644 + MMP_RS03755 0.61 -0.2 710,653 - MMP_RS03755 0.63 +0.4 710,750 + MMP_RS03755 0.81 +0.4 710,767 - MMP_RS03755 0.84 +0.1 710,783 - MMP_RS03755 0.87 -0.4 710,784 + MMP_RS03755 0.87 -0.4 710,818 + -0.3 710,831 - -0.7 710,832 + +1.1 710,832 + -0.2 710,832 + -0.1
Or see this region's nucleotide sequence