Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03810

Experiment: H2 N-free with 10mM L-Threonine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03805 and MMP_RS03810 overlap by 4 nucleotidesMMP_RS03810 and MMP_RS03815 are separated by 7 nucleotides MMP_RS03805: MMP_RS03805 - excinuclease ABC subunit UvrB, at 717,504 to 719,444 _RS03805 MMP_RS03810: MMP_RS03810 - excinuclease ABC subunit UvrC, at 719,441 to 721,024 _RS03810 MMP_RS03815: MMP_RS03815 - excinuclease ABC subunit UvrA, at 721,032 to 723,887 _RS03815 Position (kb) 719 720 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 718.473 kb on - strand, within MMP_RS03805at 718.474 kb on + strand, within MMP_RS03805at 718.561 kb on + strand, within MMP_RS03805at 718.561 kb on + strand, within MMP_RS03805at 718.577 kb on + strand, within MMP_RS03805at 718.639 kb on + strand, within MMP_RS03805at 718.659 kb on + strand, within MMP_RS03805at 718.659 kb on + strand, within MMP_RS03805at 718.709 kb on + strand, within MMP_RS03805at 718.725 kb on - strand, within MMP_RS03805at 718.773 kb on + strand, within MMP_RS03805at 718.999 kb on - strand, within MMP_RS03805at 719.025 kb on - strand, within MMP_RS03805at 719.111 kb on - strand, within MMP_RS03805at 719.111 kb on - strand, within MMP_RS03805at 719.132 kb on - strand, within MMP_RS03805at 719.134 kb on - strand, within MMP_RS03805at 719.135 kb on + strand, within MMP_RS03805at 719.153 kb on + strand, within MMP_RS03805at 719.174 kb on + strand, within MMP_RS03805at 719.174 kb on + strand, within MMP_RS03805at 719.238 kb on + strand, within MMP_RS03805at 719.250 kb on - strand, within MMP_RS03805at 719.291 kb on - strandat 719.295 kb on + strandat 719.479 kb on + strandat 719.494 kb on - strandat 719.525 kb on - strandat 719.687 kb on - strand, within MMP_RS03810at 719.857 kb on - strand, within MMP_RS03810at 719.858 kb on + strand, within MMP_RS03810at 719.897 kb on - strand, within MMP_RS03810at 720.072 kb on + strand, within MMP_RS03810at 720.136 kb on - strand, within MMP_RS03810at 720.219 kb on - strand, within MMP_RS03810at 720.246 kb on + strand, within MMP_RS03810at 720.264 kb on + strand, within MMP_RS03810at 720.502 kb on + strand, within MMP_RS03810at 720.502 kb on + strand, within MMP_RS03810at 720.526 kb on - strand, within MMP_RS03810at 720.527 kb on + strand, within MMP_RS03810at 720.527 kb on + strand, within MMP_RS03810at 720.549 kb on + strand, within MMP_RS03810at 720.630 kb on - strand, within MMP_RS03810at 720.652 kb on - strand, within MMP_RS03810at 720.652 kb on - strand, within MMP_RS03810at 720.652 kb on - strand, within MMP_RS03810at 720.653 kb on + strand, within MMP_RS03810at 720.729 kb on - strand, within MMP_RS03810at 720.729 kb on - strand, within MMP_RS03810at 720.729 kb on - strand, within MMP_RS03810at 720.730 kb on + strand, within MMP_RS03810at 720.730 kb on + strand, within MMP_RS03810at 720.730 kb on + strand, within MMP_RS03810at 720.731 kb on - strand, within MMP_RS03810at 720.732 kb on + strand, within MMP_RS03810at 720.733 kb on - strand, within MMP_RS03810at 720.734 kb on + strand, within MMP_RS03810at 720.734 kb on + strand, within MMP_RS03810at 720.736 kb on + strand, within MMP_RS03810at 720.759 kb on + strand, within MMP_RS03810at 720.983 kb on + strandat 721.016 kb on + strandat 721.210 kb on + strandat 721.214 kb on - strandat 721.304 kb on + strandat 721.304 kb on + strandat 721.305 kb on - strandat 721.512 kb on + strand, within MMP_RS03815at 721.523 kb on - strand, within MMP_RS03815at 721.525 kb on - strand, within MMP_RS03815at 721.737 kb on + strand, within MMP_RS03815at 721.753 kb on - strand, within MMP_RS03815at 721.857 kb on + strand, within MMP_RS03815

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Threonine
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718,473 - MMP_RS03805 0.50 +0.3
718,474 + MMP_RS03805 0.50 +0.0
718,561 + MMP_RS03805 0.54 +1.7
718,561 + MMP_RS03805 0.54 -1.9
718,577 + MMP_RS03805 0.55 +0.4
718,639 + MMP_RS03805 0.58 +0.6
718,659 + MMP_RS03805 0.60 -0.2
718,659 + MMP_RS03805 0.60 +0.6
718,709 + MMP_RS03805 0.62 +0.5
718,725 - MMP_RS03805 0.63 -0.7
718,773 + MMP_RS03805 0.65 -0.9
718,999 - MMP_RS03805 0.77 -0.9
719,025 - MMP_RS03805 0.78 +1.4
719,111 - MMP_RS03805 0.83 +0.6
719,111 - MMP_RS03805 0.83 -0.3
719,132 - MMP_RS03805 0.84 -0.4
719,134 - MMP_RS03805 0.84 +0.1
719,135 + MMP_RS03805 0.84 -1.1
719,153 + MMP_RS03805 0.85 -1.1
719,174 + MMP_RS03805 0.86 -0.2
719,174 + MMP_RS03805 0.86 +0.5
719,238 + MMP_RS03805 0.89 +0.5
719,250 - MMP_RS03805 0.90 +0.7
719,291 - -0.8
719,295 + +1.1
719,479 + +0.8
719,494 - -0.0
719,525 - -1.3
719,687 - MMP_RS03810 0.16 +0.4
719,857 - MMP_RS03810 0.26 +0.9
719,858 + MMP_RS03810 0.26 -0.4
719,897 - MMP_RS03810 0.29 -0.7
720,072 + MMP_RS03810 0.40 -0.8
720,136 - MMP_RS03810 0.44 +0.1
720,219 - MMP_RS03810 0.49 -2.2
720,246 + MMP_RS03810 0.51 -0.0
720,264 + MMP_RS03810 0.52 +0.2
720,502 + MMP_RS03810 0.67 +0.6
720,502 + MMP_RS03810 0.67 -0.5
720,526 - MMP_RS03810 0.68 -0.1
720,527 + MMP_RS03810 0.69 -0.8
720,527 + MMP_RS03810 0.69 +0.5
720,549 + MMP_RS03810 0.70 -0.1
720,630 - MMP_RS03810 0.75 -1.3
720,652 - MMP_RS03810 0.76 +0.4
720,652 - MMP_RS03810 0.76 -0.8
720,652 - MMP_RS03810 0.76 -1.3
720,653 + MMP_RS03810 0.77 -0.8
720,729 - MMP_RS03810 0.81 +1.7
720,729 - MMP_RS03810 0.81 -3.1
720,729 - MMP_RS03810 0.81 -1.4
720,730 + MMP_RS03810 0.81 +1.1
720,730 + MMP_RS03810 0.81 -0.7
720,730 + MMP_RS03810 0.81 +2.2
720,731 - MMP_RS03810 0.81 -0.0
720,732 + MMP_RS03810 0.82 -0.6
720,733 - MMP_RS03810 0.82 +0.4
720,734 + MMP_RS03810 0.82 +0.3
720,734 + MMP_RS03810 0.82 -0.1
720,736 + MMP_RS03810 0.82 +0.0
720,759 + MMP_RS03810 0.83 -0.4
720,983 + -0.5
721,016 + +0.6
721,210 + +0.8
721,214 - +0.7
721,304 + +1.0
721,304 + +0.2
721,305 - +0.7
721,512 + MMP_RS03815 0.17 -1.5
721,523 - MMP_RS03815 0.17 -1.2
721,525 - MMP_RS03815 0.17 +0.5
721,737 + MMP_RS03815 0.25 +0.5
721,753 - MMP_RS03815 0.25 +0.4
721,857 + MMP_RS03815 0.29 -0.3

Or see this region's nucleotide sequence