Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03380

Experiment: H2 N-free with 10mM L-Threonine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03375 and MMP_RS03380 are separated by 142 nucleotidesMMP_RS03380 and MMP_RS03385 are separated by 4 nucleotidesMMP_RS03385 and MMP_RS03390 are separated by 16 nucleotides MMP_RS03375: MMP_RS03375 - methanogenesis marker 12 protein, at 633,847 to 634,824 _RS03375 MMP_RS03380: MMP_RS03380 - DUF354 domain-containing protein, at 634,967 to 635,980 _RS03380 MMP_RS03385: MMP_RS03385 - cation diffusion facilitator family transporter, at 635,985 to 636,860 _RS03385 MMP_RS03390: MMP_RS03390 - malate dehydrogenase, at 636,877 to 637,821 _RS03390 Position (kb) 634 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 634.127 kb on - strandat 634.333 kb on - strandat 634.397 kb on - strandat 634.398 kb on + strandat 634.588 kb on - strandat 634.655 kb on + strandat 634.843 kb on - strandat 634.847 kb on + strandat 634.867 kb on - strandat 634.870 kb on + strandat 634.874 kb on + strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.974 kb on - strandat 635.869 kb on + strandat 635.973 kb on - strandat 635.978 kb on - strandat 636.014 kb on - strandat 636.290 kb on - strand, within MMP_RS03385at 636.837 kb on + strandat 636.883 kb on + strandat 636.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Threonine
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634,127 - +0.3
634,333 - -1.9
634,397 - -1.8
634,398 + -0.8
634,588 - +0.7
634,655 + +0.1
634,843 - +1.7
634,847 + -0.6
634,867 - -0.7
634,870 + -0.9
634,874 + +1.5
634,884 - -3.1
634,884 - -0.5
634,974 - -0.5
635,869 + -1.5
635,973 - +0.5
635,978 - -0.8
636,014 - +1.8
636,290 - MMP_RS03385 0.35 -1.4
636,837 + -0.9
636,883 + -0.6
636,914 + +8.4

Or see this region's nucleotide sequence