Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08810

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08795 and MMP_RS08800 are separated by 22 nucleotidesMMP_RS08800 and MMP_RS08805 overlap by 44 nucleotidesMMP_RS08805 and MMP_RS08810 are separated by 32 nucleotidesMMP_RS08810 and MMP_RS08815 are separated by 74 nucleotides MMP_RS08795: MMP_RS08795 - 30S ribosomal protein S27e, at 1,647,312 to 1,647,497 _RS08795 MMP_RS08800: MMP_RS08800 - 50S ribosomal protein L44e, at 1,647,520 to 1,647,801 _RS08800 MMP_RS08805: MMP_RS08805 - hypothetical protein, at 1,647,758 to 1,648,345 _RS08805 MMP_RS08810: MMP_RS08810 - DNA polymerase sliding clamp, at 1,648,378 to 1,649,130 _RS08810 MMP_RS08815: MMP_RS08815 - LysR family transcriptional regulator, at 1,649,205 to 1,650,095 _RS08815 Position (kb) 1648 1649 1650Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1648.360 kb on - strandat 1648.361 kb on + strandat 1649.069 kb on + strandat 1649.109 kb on - strandat 1649.112 kb on - strandat 1649.167 kb on + strandat 1649.180 kb on + strandat 1649.279 kb on + strandat 1649.374 kb on + strandat 1649.399 kb on - strandat 1649.440 kb on + strandat 1649.484 kb on - strandat 1649.485 kb on + strandat 1649.496 kb on + strandat 1649.535 kb on - strandat 1649.661 kb on - strandat 1649.750 kb on - strandat 1649.752 kb on - strandat 1649.766 kb on + strandat 1649.775 kb on - strandat 1649.792 kb on - strandat 1649.897 kb on + strandat 1649.920 kb on + strandat 1649.985 kb on + strandat 1650.104 kb on - strandat 1650.125 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,648,360 - -1.1
1,648,361 + -0.9
1,649,069 + -3.9
1,649,109 - -1.1
1,649,112 - -1.7
1,649,167 + -2.1
1,649,180 + -1.7
1,649,279 + -3.5
1,649,374 + -4.8
1,649,399 - -5.2
1,649,440 + -1.9
1,649,484 - -4.5
1,649,485 + -3.5
1,649,496 + -2.2
1,649,535 - -3.8
1,649,661 - -3.7
1,649,750 - -2.7
1,649,752 - -5.5
1,649,766 + -4.8
1,649,775 - -4.6
1,649,792 - -5.3
1,649,897 + -1.7
1,649,920 + -3.5
1,649,985 + -2.0
1,650,104 - -4.1
1,650,125 + -2.7

Or see this region's nucleotide sequence