Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08795

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08785 and MMP_RS08790 are separated by 8 nucleotidesMMP_RS08790 and MMP_RS08795 are separated by 113 nucleotidesMMP_RS08795 and MMP_RS08800 are separated by 22 nucleotidesMMP_RS08800 and MMP_RS08805 overlap by 44 nucleotidesMMP_RS08805 and MMP_RS08810 are separated by 32 nucleotides MMP_RS08785: MMP_RS08785 - RNA-protein complex protein Nop10, at 1,646,237 to 1,646,392 _RS08785 MMP_RS08790: MMP_RS08790 - translation initiation factor IF-2 subunit alpha, at 1,646,401 to 1,647,198 _RS08790 MMP_RS08795: MMP_RS08795 - 30S ribosomal protein S27e, at 1,647,312 to 1,647,497 _RS08795 MMP_RS08800: MMP_RS08800 - 50S ribosomal protein L44e, at 1,647,520 to 1,647,801 _RS08800 MMP_RS08805: MMP_RS08805 - hypothetical protein, at 1,647,758 to 1,648,345 _RS08805 MMP_RS08810: MMP_RS08810 - DNA polymerase sliding clamp, at 1,648,378 to 1,649,130 _RS08810 Position (kb) 1647 1648Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1646.524 kb on - strand, within MMP_RS08790at 1646.550 kb on + strand, within MMP_RS08790at 1646.713 kb on - strand, within MMP_RS08790at 1647.112 kb on - strand, within MMP_RS08790at 1647.218 kb on - strandat 1647.219 kb on + strandat 1647.223 kb on - strandat 1647.224 kb on + strandat 1647.230 kb on + strandat 1647.240 kb on - strandat 1647.243 kb on + strandat 1647.250 kb on + strandat 1647.277 kb on - strandat 1647.278 kb on + strandat 1647.283 kb on - strandat 1647.304 kb on + strandat 1647.313 kb on - strandat 1647.319 kb on + strandat 1647.322 kb on + strandat 1648.360 kb on - strandat 1648.361 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,646,524 - MMP_RS08790 0.15 -0.1
1,646,550 + MMP_RS08790 0.19 -1.4
1,646,713 - MMP_RS08790 0.39 -2.5
1,647,112 - MMP_RS08790 0.89 -0.1
1,647,218 - -2.3
1,647,219 + -4.0
1,647,223 - -3.6
1,647,224 + -3.6
1,647,230 + -2.7
1,647,240 - -3.5
1,647,243 + -2.9
1,647,250 + -4.8
1,647,277 - +0.0
1,647,278 + +0.4
1,647,283 - -1.4
1,647,304 + +0.6
1,647,313 - -0.7
1,647,319 + -0.1
1,647,322 + -0.3
1,648,360 - -1.1
1,648,361 + -0.9

Or see this region's nucleotide sequence